Rmu_co8458253.1_g000001

Glucose and ribitol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8458253.1
OG0029991
Physical Location & Seq
Forward (+)
508 .. 1075
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8458253.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atggactctgatggcaggaaaatgcctcctcaaaagcaagaatctcagcctggaaaagaacacgccatgaaccctaaccctcagttctcaaacccagattacaaaccctctaacaagcttcaaggaaaggtggcgatagtgaccggaggagactccggtatagggcgggcggtaagccattactttgctcaggagggtgcaactgtggccttcacttatgtgaagggccaggaggaaacggatgcacgtgacacacttgaaatgatcaagaaggtgaaaacttctgatgccaaagaccctattgcaatcgcagctgatctcggtttcgatgaaaattgcaggagggttgtggaggaggtggtgaaagcgtacgggcgcattgatattctggttaacaatgcggctgagcagtacaagaccagctcggtggaagatatcgatgaggctcgtattggtgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

153

Amino Acids

16.73

Weight (kDa)

5.11

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029991)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0454531
rosa_multiflora Rmu_co8458253.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 166, 170, 401
AcvI CACGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 371, 413
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 122, 260
AjnI CCWGG 2 cut(s) 49, 228
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 3 cut(s) 118, 314, 423
AluI AGCT 3 cut(s) 118, 314, 423
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 2 cut(s) 207, 226
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 286, 373
BbrPI CACGTG 1 cut(s) 248
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 51, 230
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 144
BisI GCNGC 2 cut(s) 312, 402
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 2 cut(s) 313, 403
Bme1390I CCNGG 2 cut(s) 51, 230
BmgT120I GGNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 51, 230
BmsI GCATC 2 cut(s) 232, 277
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 143, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 51, 230
BseCI ATCGAT 1 cut(s) 438
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 4 cut(s) 59, 95, 203, 396
BseRI GAGGAG 3 cut(s) 18, 162, 368
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 209, 228
BshVI ATCGAT 1 cut(s) 438
BsiSI CCGG 2 cut(s) 144, 156
BsiWI CGTACG 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 209, 228
Bsp143I GATC 2 cut(s) 264, 316
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 3 cut(s) 166, 170, 401
BspANI GGCC 2 cut(s) 209, 228
BspCNI CTCAG 4 cut(s) 58, 94, 202, 397
BspDI ATCGAT 1 cut(s) 438
BssMI GATC 2 cut(s) 264, 316
Bst2UI CCWGG 2 cut(s) 51, 230
Bst4CI ACNGT 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 45, 81, 189, 405
BstF5I GGATG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 267, 319
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 264, 316
BstMWI GCNNNNNNNGC 2 cut(s) 206, 311
BstNI CCWGG 2 cut(s) 51, 230
BstSCI CCNGG 2 cut(s) 49, 228
BstV1I GCAGC 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 2 cut(s) 209, 228
BsuTUI ATCGAT 1 cut(s) 438
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 2 cut(s) 370, 412
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 49, 118, 177, 209, 228, 314, 404, 423, 446
CviKI_1 RGCY 9 cut(s) 49, 118, 177, 209, 228, 314, 404, 423, 446
CviQI GTAC 2 cut(s) 370, 412
DdeI CTNAG 4 cut(s) 45, 81, 189, 405
DpnI GATC 2 cut(s) 266, 318
DpnII GATC 2 cut(s) 264, 316
Eco32I GATATC 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 49, 228
EcoRV GATATC 1 cut(s) 436
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 161, 219
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 312, 402
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 312, 402
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 312, 402
HaeIII GGCC 2 cut(s) 209, 228
HapII CCGG 2 cut(s) 144, 156
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 3 cut(s) 5, 41, 152
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 2 cut(s) 144, 156
HphI GGTGA 2 cut(s) 286, 373
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 10, 286
Hpy188III TCNNGA 2 cut(s) 191, 268
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 217, 220, 265
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 200, 245, 305, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 311
HpyF3I CTNAG 4 cut(s) 45, 81, 189, 405
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 264
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 264, 316
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 2 cut(s) 232, 277
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 139, 248
MalI GATC 2 cut(s) 266, 318
MboI GATC 2 cut(s) 264, 316
MboII GAAGA 1 cut(s) 443
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 146
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 144, 156
MspR9I CCNGG 2 cut(s) 51, 230
MvaI CCWGG 2 cut(s) 51, 230
MwoI GCNNNNNNNGC 2 cut(s) 206, 311
NdeII GATC 2 cut(s) 264, 316
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 139, 248
OliI CACNNNNGTG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 41
Pfl23II CGTACG 1 cut(s) 369
PkrI GCNGC 2 cut(s) 313, 403
PleI GAGTC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 49, 228
PspCI CACGTG 1 cut(s) 248
PspGI CCWGG 2 cut(s) 49, 228
PspLI CGTACG 1 cut(s) 369
PspPI GGNCC 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 371, 413
RsaNI GTAC 2 cut(s) 370, 412
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 312, 402
Sau3AI GATC 2 cut(s) 264, 316
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 51, 230
SetI ASST 7 cut(s) 120, 132, 250, 276, 316, 360, 425
SfaNI GCATC 2 cut(s) 232, 277
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 334
SsiI CCGC 3 cut(s) 166, 170, 401
StyD4I CCNGG 2 cut(s) 49, 228
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 327, 438
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 411
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseFI GTSAC 2 cut(s) 139, 248
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 2 cut(s) 139, 248
TspDTI ATGAA 2 cut(s) 83, 345
TspGWI ACGGA 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.