Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029912

Physical Location & Seq

Genomic Coordinates Forward (+)

4905121 .. 4905438

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGGGTAAAATGTATACTTGGGAGCCAAATGTCAAAATCTCAGTGGGAGCAGTGGCCCCCACTAGTCCTGAACTGCCTCCGCCCCTGCCCACGTGAAGGAGATCGCGGAGTTCGCAGTGTCCTCAAGAAATCTAAGAACAAGTTGGTGTTCCAGAGCGTCGTCAAAGGCGAGACTCAGGTGGTCGCCGGGGAAAACTTCCGACTCGTTATTGCCGTCAAGGATAAATCCTCGGCTGTGAAATATGAGGCTGTTGTGTGGGAGAGGCTTTGGTTGAACAGTAAGATATTGACCTCCTTCAAACAAGTCAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

105

Amino Acids

11.95

Weight (kDa)

9.91

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	43 - 103	5.7e-23	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029912)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455041
rosa_wichuraiana	Rw3G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	1 cut(s)	108
AciI	CCGC	2 cut(s)	82, 108
AcvI	CACGTG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	277, 301
AhlI	ACTAGT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	190
BbrPI	CACGTG	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	26, 59
BmrFI	CCNGG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	189, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	189, 231
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	56, 191
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	2 cut(s)	82, 108
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	55, 190
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	26, 59
BssECI	CCNNGG	2 cut(s)	189, 231
BssMI	GATC	1 cut(s)	103
BssNAI	GTATAC	1 cut(s)	17
Bst1107I	GTATAC	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	42, 135, 177
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	188
BstUI	CGCG	1 cut(s)	108
BstZ17I	GTATAC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	58
BtsI	GCAGTG	2 cut(s)	59, 124
BtsIMutI	CAGTG	3 cut(s)	50, 59, 124
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	1 cut(s)	148
CviJI	RGCY	5 cut(s)	27, 58, 236, 251, 268
CviKI_1	RGCY	5 cut(s)	27, 58, 236, 251, 268
DdeI	CTNAG	3 cut(s)	42, 135, 177
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	95
FaiI	YATR	2 cut(s)	17, 246
FblI	GTMKAC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	175, 204
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	70, 127, 154
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	92, 307
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	3 cut(s)	42, 135, 177
HpySE526I	ACGT	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	24, 49
LpnPI	CCDG	5 cut(s)	83, 100, 164, 167, 202
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	94
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	169, 198
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	89, 134, 241, 241, 258, 304
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	26, 59
NmeAIII	GCCGAG	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 213
PleI	GAGTC	2 cut(s)	169, 198
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	2 cut(s)	169, 198
Ppu21I	YACGTR	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	26, 59
PspPI	GGNCC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	169, 198
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	3 cut(s)	97, 183, 296
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SpeI	ACTAGT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	82, 108
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	97
TscAI	CASTG	3 cut(s)	50, 59, 124
TspRI	CASTG	3 cut(s)	50, 59, 124
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.