Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0029912

Physical Location & Seq

Genomic Coordinates Forward (+)

4193612 .. 4196169

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAGTGAAGTTGTCGCCATTGGCTGTGGCTCAGAGTCAAGCTATGGCTCTGAGGCGAGCAGCAGAAGTCGTCACTTGGCCCCCACTAGTCCTGAACTGCCTCCGCCCCTGCCCACGTGAAGGAGATCGCGGAGTTCGCAATGTCCTCAAGAAATCTAAGAACAAGTTGGTGTTCCAGAGCGTCGTCAAAGGCGAGACTCAGGTGGTCACAGGGGAAAACTTCCGGCTCGTCATTGTCGTCAAGGATAAATCCTCGGCTGTGAAATATGAGGCTGTTGCGTGGGAGAGGCTTTGGTTGAACAGTAAGATATTGACCTCCTTCAAACAAGTCAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

10.08

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	51 - 111	2.8e-21	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029912)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455041
rosa_wichuraiana	Rw3G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	106, 132
AcvI	CACGTG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	301, 325
AhlI	ACTAGT	1 cut(s)	88
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	81
BbrPI	CACGTG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	44, 47, 215
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	106, 132
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	45, 46, 214
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	33, 53, 159, 201
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	81
CseI	GACGC	1 cut(s)	172
CviJI	RGCY	9 cut(s)	26, 32, 44, 50, 82, 229, 260, 275, 292
CviKI_1	RGCY	9 cut(s)	26, 32, 44, 50, 82, 229, 260, 275, 292
DdeI	CTNAG	4 cut(s)	33, 53, 159, 201
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	119
FaiI	YATR	2 cut(s)	47, 270
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	37, 199
HpaII	CCGG	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	36, 54
Hpy188III	TCNNGA	3 cut(s)	94, 151, 178
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	116, 331
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	4 cut(s)	33, 53, 159, 201
HpySE526I	ACGT	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	107, 124, 188, 191, 198, 239
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	73, 208
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MlyI	GAGTC	2 cut(s)	46, 193
MnlI	CCTC	7 cut(s)	48, 113, 158, 265, 265, 282, 328
MspI	CCGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	73, 208
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 237
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	2 cut(s)	45, 193
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
PpsI	GAGTC	2 cut(s)	45, 193
Ppu21I	YACGTR	1 cut(s)	119
PspCI	CACGTG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	81
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	2 cut(s)	46, 193
SetI	ASST	4 cut(s)	46, 121, 207, 320
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	106, 132
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	73, 208
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	73, 208
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.