Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029953

Physical Location & Seq

Genomic Coordinates Forward (+)

7456916 .. 7458618

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTGGTTCATTTGTTTACTTCAAAGTTGGTGTAGAAATGAGTCTTCAAAGCAAAGCAGGAGTGAGAAGAAGAGCCATAAGGCAATGCTGAAGCTGGGTATGAAGAAAGTCACTGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAACGAAAGTTGCGCCCAGATTTGTAGTAGTATTGGGACTTCACATGCACAGGATGATCCAGTTCTATGGCGGACTCTGCTTAGCTCTTGCAATAAGATACATAAAAACGTGGAAATAGGAGAATTTGCCTTGAAGAATCTAATCTGTTTAGGGCCATCGAATGCAGGGGACTACGTACTTCTTGCTACTATTTATTTTAGGGCGAAAGATGCAGATGGTGTTTCAAGGATGAGAAAATTGATTAAAAACCAGGGAGTGAGGACCACTCCTGGTTGGAGCTGGATTGAAGTTGGCGATCATCAGCTAGTAGTCCAGCGAGCTGCTCTACATGGTTACTTGCAAGAGGAATCTCTTATTACAGCCTCTGAATTTACCTCTACAGACACCAACTGTTCGGGAACTTCTGGTTCATGTCATAGTGAGAAGCTGGCACTTGCTTTTGGCTTGGCAAGAACTCCAGAACGAACATGTTTACGGATAGGTAAAAACCTGAGAGTTTGTAGAGATTGCCATTCATTTACAAAATTTGTTTCCCAAGCTTTTAATCGAGAAATAATTGTTAGCGATCGAGTTCGGTTTCATCAGTTCAAGGGTGGATTGTGTAGTTGTAAAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

256

Amino Acids

28.79

Weight (kDa)

9.46

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	22 - 51	6.2e-07	NAC domain
E_motif	PF20431	83 - 145	1.6e-14	E motif
DYW_deaminase	PF14432	187 - 256	6.3e-31	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029953)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458881
rosa_samantha	Rh3BG093000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	269, 515, 671
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	324
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	6 cut(s)	23, 48, 280, 372, 434, 736
AjnI	CCWGG	2 cut(s)	396, 415
AluBI	AGCT	7 cut(s)	94, 231, 426, 451, 467, 574, 686
AluI	AGCT	7 cut(s)	94, 231, 426, 451, 467, 574, 686
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	3 cut(s)	269, 515, 671
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	299, 408
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	408
BarI	GAAGNNNNNNTAC	2 cut(s)	169, 201
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	140, 310, 356
BciT130I	CCWGG	2 cut(s)	398, 417
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	2 cut(s)	398, 417
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	299, 408
BmrFI	CCNGG	2 cut(s)	398, 417
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
BpmI	CTGGAG	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	118, 206
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	398, 417
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	205, 381
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	2 cut(s)	118, 206
BseXI	GCAGC	1 cut(s)	454
BseYI	CCCAGC	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	715
BshFI	GGCC	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	715
BslFI	GGGAC	2 cut(s)	196, 329
BsmFI	GGGAC	2 cut(s)	196, 329
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	202, 442, 712
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	118, 206
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	202, 442, 712
Bst2UI	CCWGG	2 cut(s)	398, 417
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	465, 576
BstDEI	CTNAG	2 cut(s)	227, 638
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	205, 381
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	205, 445, 715
BstMBI	GATC	3 cut(s)	202, 442, 712
BstMCI	CGRYCG	1 cut(s)	715
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 356
BstNI	CCWGG	2 cut(s)	398, 417
BstNSI	RCATGY	2 cut(s)	194, 618
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	396, 415
BstSFI	CTRYAG	1 cut(s)	525
BstSNI	TACGTA	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	205, 381
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	465, 576
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	299, 408
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	191, 476, 558, 615
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	227, 638
DpnI	GATC	3 cut(s)	204, 444, 714
DpnII	GATC	3 cut(s)	202, 442, 712
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	232
Eco105I	TACGTA	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	396, 415
FaeI	CATG	4 cut(s)	194, 479, 561, 618
FaiI	YATR	9 cut(s)	78, 101, 192, 214, 249, 477, 559, 564, 616
FaqI	GGGAC	2 cut(s)	196, 329
FatI	CATG	4 cut(s)	190, 475, 557, 614
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	212, 388
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	468
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	194, 479, 561, 618
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	4 cut(s)	41, 220, 283, 494
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	17, 620
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	4 cut(s)	136, 543, 605, 695
Hpy8I	GTNNAC	2 cut(s)	17, 620
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	2 cut(s)	255, 321
HpyCH4V	TGCA	5 cut(s)	194, 237, 311, 359, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 356
HpyF3I	CTNAG	2 cut(s)	227, 638
HpySE526I	ACGT	2 cut(s)	255, 321
Hsp92II	CATG	4 cut(s)	194, 479, 561, 618
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	202, 442, 712
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	423
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	2 cut(s)	255, 321
MaeIII	GTNAC	3 cut(s)	109, 127, 479
MalI	GATC	3 cut(s)	204, 444, 714
MboI	GATC	3 cut(s)	202, 442, 712
MboII	GAAGA	5 cut(s)	36, 79, 82, 115, 292
MluCI	AATT	5 cut(s)	269, 383, 515, 671, 702
MlyI	GAGTC	2 cut(s)	50, 214
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	399, 484, 520, 532
MseI	TTAA	2 cut(s)	390, 690
MspR9I	CCNGG	2 cut(s)	398, 417
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	398, 417
MwoI	GCNNNNNNNGC	2 cut(s)	223, 356
NdeII	GATC	3 cut(s)	202, 442, 712
NlaIII	CATG	4 cut(s)	194, 479, 561, 618
NmuCI	GTSAC	2 cut(s)	109, 127
NspI	RCATGY	2 cut(s)	194, 618
PciI	ACATGT	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	283, 494
PkrI	GCNGC	1 cut(s)	469
Ple19I	CGATCG	1 cut(s)	715
PleI	GAGTC	2 cut(s)	49, 214
PpsI	GAGTC	2 cut(s)	49, 214
Ppu21I	YACGTR	1 cut(s)	322
PscI	ACATGT	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	396, 415
PspEI	GGTNACC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	2 cut(s)	396, 415
PspPI	GGNCC	2 cut(s)	299, 408
PstNI	CAGNNNCTG	1 cut(s)	512
PvuI	CGATCG	1 cut(s)	715
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	390, 690
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	202, 442, 712
Sau96I	GGNCC	2 cut(s)	299, 408
SchI	GAGTC	2 cut(s)	50, 214
ScrFI	CCNGG	2 cut(s)	398, 417
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	408
SnaBI	TACGTA	1 cut(s)	322
Sse9I	AATT	5 cut(s)	269, 383, 515, 671, 702
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	396, 415
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	2 cut(s)	258, 324
TaqI	TCGA	3 cut(s)	305, 694, 715
TasI	AATT	5 cut(s)	269, 383, 515, 671, 702
TfiI	GAWTC	2 cut(s)	283, 494
Tru1I	TTAA	2 cut(s)	390, 690
Tru9I	TTAA	2 cut(s)	390, 690
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	109, 127
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	109, 127
TspDTI	ATGAA	4 cut(s)	116, 546, 651, 716
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	3 cut(s)	269, 515, 671
XceI	RCATGY	2 cut(s)	194, 618
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.