RchiOBHm_Chr3g0461331

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
9414489 .. 9415153
665 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGCTAGATTTAAGGATGCAATATCAATATTGGTGTGTGTACTTTTTCGAAAGAGCACACACCTATATCGGGAATTCGCCGCCTTCATCACTGACTTGGTTTCTGTTGTATCATCCACCATCCAAGTTTCTGGCTTTATTTTTCTGCATAGTACAAGGGATGTTTCTGCAGGCAGCAGCAGGCACTCCCCTATGTACTCATCGATGTTCGCTCGACATGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.47

Weight (kDa)

9.62

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021228)

Species Orthologous Gene IDs
prunus_persica Prupe.6G288400_v2.0.a1
pyrus_communis pycom12g17260
rosa_chinensis RchiOBHm_Chr3g0461331
rosa_roxburghii Rroxscaffold_6G00418400 Rroxscaffold_6G00418690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 3 cut(s) 42, 154, 197
AfiI CCNNNNNNNGG 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 174, 177
ApoI RAATTY 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 186, 189
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 81, 175, 178
BlsI GCNGC 3 cut(s) 82, 176, 179
BmsI GCATC 1 cut(s) 7
Bpu14I TTCGAA 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseCI ATCGAT 1 cut(s) 203
BseGI GGATG 4 cut(s) 22, 113, 120, 166
BseLI CCNNNNNNNGG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 186, 189
BshVI ATCGAT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 49
BssMI GATC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 172, 182
BstF5I GGATG 4 cut(s) 22, 113, 120, 166
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 186, 189
BstXI CCANNNNNNTGG 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 203
BsuTUI ATCGAT 1 cut(s) 203
BtsCI GGATG 4 cut(s) 22, 113, 120, 166
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 172, 182
ClaI ATCGAT 1 cut(s) 203
Csp6I GTAC 3 cut(s) 41, 153, 196
CviAII CATG 1 cut(s) 218
CviJI RGCY 2 cut(s) 5, 135
CviKI_1 RGCY 2 cut(s) 5, 135
CviQI GTAC 3 cut(s) 41, 153, 196
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 74
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 67, 150, 194, 219
FatI CATG 1 cut(s) 217
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 81, 175, 178
FokI GGATG 4 cut(s) 29, 100, 107, 173
Fsp4HI GCNGC 3 cut(s) 81, 175, 178
FspBI CTAG 1 cut(s) 6
GluI GCNGC 3 cut(s) 81, 175, 178
Hin1II CATG 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 20, 148, 170
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 117, 156, 166
Lsp1109I GCAGC 2 cut(s) 186, 189
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 74
MseI TTAA 1 cut(s) 12
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 221
NspV TTCGAA 1 cut(s) 49
PkrI GCNGC 3 cut(s) 82, 176, 179
PstI CTGCAG 1 cut(s) 172
RsaI GTAC 3 cut(s) 42, 154, 197
RsaNI GTAC 3 cut(s) 41, 153, 196
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 81, 175, 178
Sau3AI GATC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 59
SetI ASST 1 cut(s) 66
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 49
SgeI CNNG 8 cut(s) 18, 83, 109, 137, 144, 168, 183, 193
Sse9I AATT 1 cut(s) 74
SsiI CCGC 1 cut(s) 81
SspI AATATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 6
TaqI TCGA 3 cut(s) 49, 203, 214
TasI AATT 1 cut(s) 74
TatI WGTACW 3 cut(s) 40, 152, 195
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 97
TseI GCWGC 2 cut(s) 174, 177
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 74
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.