RchiOBHm_Chr3g0461421

Bifunctional purine biosynthesis protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
9490008 .. 9493922
3915 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGTGCATCATTCCCTCTTGTCGTCCACTTCCAATTCACTTTCTATTCCCACTCCCACTCTCTCTTCCGTCTTTGTCTTCTTCAGTTTGTCATCAAGGCATCTAACATTGCCTCTCTTATTCGGTCAAGACCAGTCTTGCTCACTGAAGAACTCATCTTGGCTGCACACCAGTTGCCAACCAATTAATGCCGTGGCTGCCCAAGAGGCTCAATCCTCAGCCTCAGGTGATAGGCAGGCTCTGATATCTTTGTCAGACAAAAACAATCTTGCTTTCTTAGGGAATGAGCTTCAGAACTTGGGATATAAAATTGTTTCCACTGGAGGAAACTGCTATAGCCTCCTTGGTTCATCCATTCTAACAACCCCAGAATTGAAGAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

13.67

Weight (kDa)

7.77

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022406)

Species Orthologous Gene IDs
malus_domestica MD12G1089100.v1.1
rosa_chinensis RchiOBHm_Chr3g0461401 RchiOBHm_Chr3g0461421
rosa_samantha Rh1AG094000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 67, 167, 275
AgsI TTSAA 1 cut(s) 376
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 163, 197
AseI ATTAAT 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 150, 184
BceAI ACGGC 1 cut(s) 176
BfaI CTAG 1 cut(s) 385
BfmI CTRYAG 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 2 cut(s) 164, 198
BlsI GCNGC 2 cut(s) 165, 199
BmsI GCATC 2 cut(s) 16, 109
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 192, 343
Bse1I ACTGG 3 cut(s) 133, 171, 325
Bse21I CCTNAGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 192, 343
BseGI GGATG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 231, 237
BseNI ACTGG 3 cut(s) 133, 171, 325
BseXI GCAGC 2 cut(s) 150, 184
BsgI GTGCAG 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 230, 236
BsrDI GCAATG 1 cut(s) 107
BsrI ACTGG 3 cut(s) 133, 171, 325
BssECI CCNNGG 2 cut(s) 192, 343
BssT1I CCWWGG 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 217, 223, 277
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 197, 206
BstSFI CTRYAG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 150, 184
BstV2I GAAGAC 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 143, 318
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 241
CviJI RGCY 7 cut(s) 163, 197, 209, 221, 239, 289, 339
CviKI_1 RGCY 7 cut(s) 163, 197, 209, 221, 239, 289, 339
DdeI CTNAG 3 cut(s) 217, 223, 277
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 343
Eco32I GATATC 1 cut(s) 246
Eco57I CTGAAG 3 cut(s) 67, 167, 275
Eco81I CCTNAGG 1 cut(s) 223
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaiI YATR 2 cut(s) 306, 336
Fnu4HI GCNGC 2 cut(s) 164, 198
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 164, 198
FspBI CTAG 1 cut(s) 385
GluI GCNGC 2 cut(s) 164, 198
GsuI CTGGAG 1 cut(s) 342
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 243, 256, 294
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 7, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 206
HpyF3I CTNAG 3 cut(s) 217, 223, 277
LpnPI CCDG 6 cut(s) 146, 184, 210, 221, 306, 381
Lsp1109I GCAGC 2 cut(s) 150, 184
LweI GCATC 2 cut(s) 16, 109
MaeI CTAG 1 cut(s) 385
MboII GAAGA 4 cut(s) 57, 70, 73, 160
MluCI AATT 4 cut(s) 34, 183, 309, 371
MnlI CCTC 7 cut(s) 26, 123, 199, 226, 232, 317, 350
MseI TTAA 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 197, 206
PkrI GCNGC 2 cut(s) 165, 199
PshBI ATTAAT 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 164, 198
SetI ASST 2 cut(s) 229, 291
SfaNI GCATC 2 cut(s) 16, 109
SfcI CTRYAG 1 cut(s) 334
Sse9I AATT 4 cut(s) 34, 183, 309, 371
SspMI CTAG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 343
TaqII GACCGA 1 cut(s) 113
TasI AATT 4 cut(s) 34, 183, 309, 371
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 150, 325
TseI GCWGC 2 cut(s) 163, 197
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 150, 325
VspI ATTAAT 1 cut(s) 186
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.