RchiOBHm_Chr3g0470201

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
16128479 .. 16128823
345 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGTGCACTCCACTATCAGTCTTCATGATATGAGAGAAAGAGATGAGTTCTGTAGAGAACAAGGGCGTGTTTTCAGAGAGCAAAAGAAGGAATTGATCATAGCTGCGGAGAGACTTGTGCTGAGAACAATTGATTTTGATCTCGACGTTCAGCTACCATACAATAAGACTCTTGTTGCTGCTCTCAAGAGATTGAGTAAGGAGAAATTCACTGGGTTTAGGCTCCCTGAGCTTACTAAAGTGGCATGGTGTCTTGTGGATGAGGTGCTTACTACATCGTTGTGCTTGCAGTACAAGCCACAATATATTGCGGCTGGTTTATCATTGTCAGTGCTTCGATTCTGA

Protein Analysis

114

Amino Acids

13.3

Weight (kDa)

8.86

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021376)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0470201
rosa_samantha Rh3AG156800 Rh3BG180900 Rh3CG171700
rosa_wichuraiana Rw0G008570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 311
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 293
AluBI AGCT 3 cut(s) 104, 154, 232
AluI AGCT 3 cut(s) 104, 154, 232
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 5
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 104, 179
ApoI RAATTY 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 91, 166
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 3 cut(s) 105, 180, 312
BlsI GCNGC 3 cut(s) 106, 181, 313
BmiI GGNNCC 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 138
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 2 cut(s) 113, 219
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 91, 166
BsiHKAI GWGCWC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 96, 139
BspACI CCGC 2 cut(s) 107, 311
BspCNI CTCAG 2 cut(s) 114, 220
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 217
BssMI GATC 2 cut(s) 96, 139
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 122, 228
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 99, 142
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 96, 139
BstMWI GCNNNNNNNGC 2 cut(s) 229, 295
BstSFI CTRYAG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 91, 166
BstV2I GAAGAC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 210, 336
Cac8I GCNNGC 1 cut(s) 287
CciI TCATGA 1 cut(s) 25
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 26, 246
CviJI RGCY 6 cut(s) 104, 154, 223, 232, 298, 314
CviKI_1 RGCY 6 cut(s) 104, 154, 223, 232, 298, 314
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 122, 228
DpnI GATC 2 cut(s) 98, 141
DpnII GATC 2 cut(s) 96, 139
FaeI CATG 2 cut(s) 29, 249
FaiI YATR 6 cut(s) 27, 32, 101, 160, 247, 306
FatI CATG 2 cut(s) 25, 245
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 105, 180, 312
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 105, 180, 312
GluI GCNGC 3 cut(s) 105, 180, 312
Hin1II CATG 2 cut(s) 29, 249
HinfI GANTC 2 cut(s) 169, 339
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 77, 344
Hpy188III TCNNGA 3 cut(s) 26, 143, 187
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 7, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 295
HpyF3I CTNAG 2 cut(s) 122, 228
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 29, 249
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 139
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 3 cut(s) 198, 240, 300
Lsp1109I GCAGC 2 cut(s) 91, 166
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 98, 141
MboI GATC 2 cut(s) 96, 139
MboII GAAGA 1 cut(s) 14
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 92, 129, 206
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 280
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 229, 295
NdeII GATC 2 cut(s) 96, 139
NlaIII CATG 2 cut(s) 29, 249
NlaIV GGNNCC 1 cut(s) 224
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 3 cut(s) 106, 181, 313
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 224
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 280
SatI GCNGC 3 cut(s) 105, 180, 312
Sau3AI GATC 2 cut(s) 96, 139
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 106, 150, 156, 234, 267
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 92, 129, 206
SsiI CCGC 2 cut(s) 107, 311
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 144, 337
TasI AATT 3 cut(s) 92, 129, 206
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 339
TscAI CASTG 2 cut(s) 217, 336
TseI GCWGC 2 cut(s) 104, 179
TspDTI ATGAA 1 cut(s) 14
TspRI CASTG 2 cut(s) 217, 336
VneI GTGCAC 1 cut(s) 5
XapI RAATTY 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.