Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00325

Orthogroup ID

OG0021376

Physical Location & Seq

Genomic Coordinates Reverse (-)

10974 .. 11675

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGTCAAATTGTGCTCTCAATACTGCTCGTATCTCCACCAGCTCGGCTCCAAGCTCAGACTTCCACACCTCACCATAGTCAAGGCCATCATGTTCTGCCACCGCTTCTACACACGTCAATCCCACGCCAAGAACGACCGGCACACCGTCACTACTGCCTGCATTTTCTCGCCGGAAAAGTGAATGAGTCACAAAGCCCTCTGAGCGACGTTGTTAGTGTGGCATTTGGTAACCAGATCCAGGATCAGATCATCAACCAGATGGTGCACTCCACTATCAATCTTCATGATATGAGAGAAAGAGATGAGTTCTGTAGAGAAAAAGGGCGTGTTTTCAAAGAGCAAAAGAAGGAATTGATCATAGCTGCGGAGAGACTTGTGCTGAGAACAATCGAGTTTGATCTCGACGTTCAGCTACCATACAATAAGACTCTTGTTGCTGCTCTCAAGAGATTGAGTAAGGAGAAATTCACTGGGTATAGGCTCCCTGAGCTTACTAAAGTGGCATGGTGTCTTGTGGAGGAGGTGTGTACTACATCGTTGTGCTTGCAGTACAAGCCACAATATATTGGGGCTGGTTCAGTCGTTGTCAGGCTGGAGGGGCTTGATGTTTCGCCCAAAGAGTTGAACGAGGTCATTCAGAGGATGCAAAGCAAGATCTGCAGGGTAAAAACCAAGCAAGCTAGTCATACGCTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

233

Amino Acids

26.55

Weight (kDa)

9.08

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021376)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0470201
rosa_samantha	Rh3AG156800 Rh3BG180900 Rh3CG171700
rosa_wichuraiana	Rw0G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 368
AclWI	GGATC	2 cut(s)	232, 252
AcsI	RAATTY	1 cut(s)	467
AfaI	GTAC	2 cut(s)	532, 554
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	337, 628
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	6 cut(s)	44, 56, 365, 415, 493, 683
AluI	AGCT	6 cut(s)	44, 56, 365, 415, 493, 683
Alw21I	GWGCWC	2 cut(s)	18, 270
Alw26I	GTCTC	1 cut(s)	367
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	232, 252
AoxI	GGCC	1 cut(s)	85
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	365, 440
ApoI	RAATTY	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	18, 270
BbvI	GCAGC	2 cut(s)	352, 427
BccI	CCATC	2 cut(s)	96, 256
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	2 cut(s)	313, 661
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	2 cut(s)	366, 441
BlsI	GCNGC	2 cut(s)	367, 442
Bme1390I	CCNGG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	50, 485
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	636
BmuI	ACTGGG	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	4 cut(s)	71, 194, 374, 480
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	352, 427
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	18, 270
BsiSI	CCGG	2 cut(s)	140, 174
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	18, 270
Bsp143I	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
BspACI	CCGC	2 cut(s)	104, 368
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	4 cut(s)	70, 195, 375, 481
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	50, 485
BspMAI	CTGCAG	1 cut(s)	665
BspPI	GGATC	2 cut(s)	232, 252
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	139
BssMI	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	660
BstC8I	GCNNGC	3 cut(s)	161, 548, 681
BstDEI	CTNAG	4 cut(s)	57, 203, 383, 489
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	651
BstKTI	GATC	6 cut(s)	240, 247, 252, 360, 403, 660
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 490, 556, 601, 660
BstNI	CCWGG	1 cut(s)	242
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	2 cut(s)	313, 661
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	352, 427
BstX2I	RGATCY	2 cut(s)	237, 657
BstYI	RGATCY	2 cut(s)	237, 657
BsuRI	GGCC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	161, 548, 681
CciI	TCATGA	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	531, 553
CviAII	CATG	3 cut(s)	92, 287, 507
CviQI	GTAC	2 cut(s)	531, 553
DdeI	CTNAG	4 cut(s)	57, 203, 383, 489
DpnI	GATC	6 cut(s)	239, 246, 251, 359, 402, 659
DpnII	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	95, 290, 510
FatI	CATG	3 cut(s)	91, 286, 506
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	366, 441
FokI	GGATG	1 cut(s)	658
Fsp4HI	GCNGC	2 cut(s)	366, 441
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	2 cut(s)	366, 441
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	140, 174
Hin1II	CATG	3 cut(s)	95, 290, 510
HinfI	GANTC	3 cut(s)	4, 188, 430
HpaII	CCGG	2 cut(s)	140, 174
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	268, 531
Hpy188I	TCNGA	4 cut(s)	60, 204, 249, 642
Hpy188III	TCNNGA	3 cut(s)	287, 404, 448
Hpy8I	GTNNAC	2 cut(s)	268, 531
Hpy99I	CGWCG	2 cut(s)	212, 410
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	3 cut(s)	116, 210, 408
HpyCH4V	TGCA	5 cut(s)	163, 268, 550, 649, 663
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 490, 556, 601, 660
HpyF3I	CTNAG	4 cut(s)	57, 203, 383, 489
HpySE526I	ACGT	3 cut(s)	116, 210, 408
Hsp92II	CATG	3 cut(s)	95, 290, 510
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
LmnI	GCTCC	2 cut(s)	54, 489
Lsp1109I	GCAGC	2 cut(s)	352, 427
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	116, 210, 408
MaeIII	GTNAC	3 cut(s)	149, 189, 230
MalI	GATC	6 cut(s)	239, 246, 251, 359, 402, 659
MboI	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	2 cut(s)	237, 657
MhlI	GDGCHC	2 cut(s)	18, 270
MluCI	AATT	3 cut(s)	9, 353, 467
MlyI	GAGTC	3 cut(s)	13, 197, 424
MnlI	CCTC	7 cut(s)	81, 210, 514, 517, 592, 625, 636
MseI	TTAA	1 cut(s)	700
MslI	CAYNNNNRTG	1 cut(s)	541
MspI	CCGG	2 cut(s)	140, 174
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	204, 490, 556, 601, 660
NdeII	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
NlaIII	CATG	3 cut(s)	95, 290, 510
NlaIV	GGNNCC	2 cut(s)	50, 485
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	149, 189
PagI	TCATGA	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	367, 442
PleI	GAGTC	3 cut(s)	12, 196, 424
PpsI	GAGTC	3 cut(s)	12, 196, 424
Psp6I	CCWGG	1 cut(s)	240
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	50, 485
PstI	CTGCAG	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	237, 657
RsaI	GTAC	2 cut(s)	532, 554
RsaNI	GTAC	2 cut(s)	531, 553
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	2 cut(s)	366, 441
Sau3AI	GATC	6 cut(s)	237, 244, 249, 357, 400, 657
SchI	GAGTC	3 cut(s)	13, 197, 424
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	18, 270
SfaNI	GCATC	1 cut(s)	636
SfcI	CTRYAG	2 cut(s)	313, 661
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	9, 353, 467
SsiI	CCGC	2 cut(s)	104, 368
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	3 cut(s)	119, 213, 411
TaqI	TCGA	2 cut(s)	393, 405
TasI	AATT	3 cut(s)	9, 353, 467
TatI	WGTACW	2 cut(s)	530, 552
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	149, 189
TseI	GCWGC	2 cut(s)	365, 440
Tsp45I	GTSAC	2 cut(s)	149, 189
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.