RchiOBHm_Chr3g0470411

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0022695
Physical Location & Seq
Forward (+)
16386425 .. 16387305
881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
ATGTGTTTATTCTGTTGGTGCTGTATTGAAGCATTTTTGGTCTGGAACTACGTACTTCCGAGTTCCGATGGATCCTTTGGCCGAGTAGCTTTAAAAGTTGGCCCCTATGGAGGCACCGGTGGCGACACTTGGGATGACGGAGTTTACTCGACGGTGAGGGTGGTGGACATAGTTCACGATTCAGCCTGCGTTTTTGGGATCCAGACTAAATATAAGAGTGCCGGGGATGAGTCAATTTGGTCAGAATTTCATGGTCCAAAGAGAGCAGATTACAATAAATCTATAAGCAGTGTCAGGCTTGATGATCCAGACGAATTTCTGGTTGCAATTTTTGGACGTCATGTATCAGATTGGTTCACGCCAACCCACATTGCCTCGCTTACTTTCAAGAGCAACAAGAGTGTGTACGGACCATTTGGACTGCAGTACCCATTCGTCGTAAATAATTTCGCAATCCACGTCCCAGGGTATAAGATTGTTGGACTTCATGGCAGGTTTGACAAGTGGTTTTGGTTTCGTGCCATCGGAGCTTACCTACAGCCTATTCATCATCAGGTACCGCCTACCAAGTCTACTTATGTCAACGTTTCTTCTAATGAGATTTCAGGGACTGTGGGTAACAAAATCGGAAATTTCTCTGTCGCTAATAAGTACAGAGTTGTCAACAACATCTATAACAACACATCAGCTCAACCAACACCGGATCATGACTCTTCGGTGGAGACTGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

244

Amino Acids

27.15

Weight (kDa)

6.49

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 33 - 178 9.5e-23 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022695)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0470411
rosa_samantha Rh3AG158900 Rh3BG183400 Rh3CG173900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 483
Acc65I GGTACC 1 cut(s) 556
AccB1I GGYRCC 2 cut(s) 113, 556
AccI GTMKAC 1 cut(s) 572
AciI CCGC 1 cut(s) 560
AclI AACGTT 1 cut(s) 585
AclWI GGATC 6 cut(s) 66, 79, 193, 206, 299, 711
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 3 cut(s) 245, 314, 631
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 5 cut(s) 54, 407, 428, 558, 653
AfiI CCNNNNNNNGG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 29, 388
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 3 cut(s) 89, 530, 689
AluI AGCT 3 cut(s) 89, 530, 689
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 6 cut(s) 66, 79, 193, 206, 299, 711
AlwNI CAGNNNCTG 1 cut(s) 611
AoxI GGCC 2 cut(s) 79, 100
ApoI RAATTY 3 cut(s) 245, 314, 631
AsiGI ACCGGT 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 556
AspS9I GGNCC 3 cut(s) 101, 254, 410
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 254, 410
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BamHI GGATCC 2 cut(s) 71, 198
BanI GGYRCC 2 cut(s) 113, 556
BccI CCATC 2 cut(s) 62, 530
BciT130I CCWGG 1 cut(s) 465
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 716
BfmI CTRYAG 2 cut(s) 422, 536
BfuAI ACCTGC 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 223, 465
Bme18I GGWCC 2 cut(s) 254, 410
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 3 cut(s) 101, 254, 410
BmiI GGNNCC 5 cut(s) 73, 103, 115, 200, 558
BmrFI CCNGG 2 cut(s) 223, 465
BpuMI CCSGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 222, 463, 464
BsaWI WCCGGW 2 cut(s) 116, 700
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 730
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 222, 463, 464
BseGI GGATG 2 cut(s) 139, 232
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 730
BshFI GGCC 2 cut(s) 81, 102
BshNI GGYRCC 2 cut(s) 113, 556
BshTI ACCGGT 1 cut(s) 116
BsiSI CCGG 3 cut(s) 117, 222, 701
BslFI GGGAC 2 cut(s) 446, 622
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 2 cut(s) 446, 622
BsnI GGCC 2 cut(s) 81, 102
Bsp143I GATC 4 cut(s) 71, 198, 304, 703
BspACI CCGC 1 cut(s) 560
BspANI GGCC 2 cut(s) 81, 102
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 5 cut(s) 73, 103, 115, 200, 558
BspMAI CTGCAG 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 6 cut(s) 66, 79, 193, 206, 299, 711
BspT107I GGYRCC 2 cut(s) 113, 556
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 730
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 222, 463, 464
BssMI GATC 4 cut(s) 71, 198, 304, 703
BssNI GRCGYC 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 154, 613
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 187
BstF5I GGATG 2 cut(s) 139, 232
BstKTI GATC 4 cut(s) 74, 201, 307, 706
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 4 cut(s) 71, 198, 304, 703
BstMWI GCNNNNNNNGC 2 cut(s) 120, 527
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 2 cut(s) 221, 463
BstSFI CTRYAG 2 cut(s) 422, 536
BstSNI TACGTA 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 71, 198
BstYI RGATCY 2 cut(s) 71, 198
BsuRI GGCC 2 cut(s) 81, 102
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 139, 232
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 611
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 101, 254, 410
Csp6I GTAC 5 cut(s) 53, 406, 427, 557, 652
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 4 cut(s) 251, 341, 488, 707
CviJI RGCY 8 cut(s) 81, 89, 102, 185, 298, 530, 541, 689
CviKI_1 RGCY 8 cut(s) 81, 89, 102, 185, 298, 530, 541, 689
CviQI GTAC 5 cut(s) 53, 406, 427, 557, 652
DpnI GATC 4 cut(s) 73, 200, 306, 705
DpnII GATC 4 cut(s) 71, 198, 304, 703
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
Eco105I TACGTA 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 254, 410
EcoRII CCWGG 1 cut(s) 463
FaeI CATG 4 cut(s) 254, 344, 491, 710
FaqI GGGAC 2 cut(s) 446, 622
FatI CATG 4 cut(s) 250, 340, 487, 706
FblI GTMKAC 1 cut(s) 572
FokI GGATG 2 cut(s) 146, 239
HaeIII GGCC 2 cut(s) 81, 102
HapII CCGG 3 cut(s) 117, 222, 701
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 4 cut(s) 254, 344, 491, 710
HincII GTYRAC 2 cut(s) 583, 664
HindII GTYRAC 2 cut(s) 583, 664
HinfI GANTC 3 cut(s) 179, 230, 710
HpaII CCGG 3 cut(s) 117, 222, 701
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 8 cut(s) 145, 166, 175, 357, 406, 573, 583, 664
Hpy188I TCNGA 6 cut(s) 60, 67, 244, 349, 527, 629
Hpy188III TCNNGA 6 cut(s) 43, 176, 202, 308, 388, 707
Hpy8I GTNNAC 8 cut(s) 145, 166, 175, 357, 406, 573, 583, 664
Hpy99I CGWCG 2 cut(s) 154, 440
HpyCH4III ACNGT 2 cut(s) 154, 613
HpyCH4IV ACGT 4 cut(s) 51, 337, 459, 585
HpyCH4V TGCA 2 cut(s) 326, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 527
HpySE526I ACGT 4 cut(s) 51, 337, 459, 585
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 4 cut(s) 254, 344, 491, 710
KpnI GGTACC 1 cut(s) 560
Kzo9I GATC 4 cut(s) 71, 198, 304, 703
LmnI GCTCC 1 cut(s) 527
MaeII ACGT 4 cut(s) 51, 337, 459, 585
MaeIII GTNAC 1 cut(s) 617
MalI GATC 4 cut(s) 73, 200, 306, 705
MboI GATC 4 cut(s) 71, 198, 304, 703
MboII GAAGA 2 cut(s) 582, 705
MflI RGATCY 2 cut(s) 71, 198
MluCI AATT 6 cut(s) 234, 245, 314, 327, 445, 631
MlyI GAGTC 2 cut(s) 239, 704
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 3 cut(s) 104, 150, 385
MseI TTAA 1 cut(s) 92
MspI CCGG 3 cut(s) 117, 222, 701
MspR9I CCNGG 2 cut(s) 223, 465
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 120, 527
NciI CCSGG 1 cut(s) 223
NdeII GATC 4 cut(s) 71, 198, 304, 703
NlaIII CATG 4 cut(s) 254, 344, 491, 710
NlaIV GGNNCC 5 cut(s) 73, 103, 115, 200, 558
NmeAIII GCCGAG 1 cut(s) 107
PagI TCATGA 1 cut(s) 706
PasI CCCWGGG 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 116
PleI GAGTC 2 cut(s) 238, 704
PpsI GAGTC 2 cut(s) 238, 704
Ppu21I YACGTR 1 cut(s) 52
Psp1406I AACGTT 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 5 cut(s) 73, 103, 115, 200, 558
PspPI GGNCC 3 cut(s) 101, 254, 410
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 2 cut(s) 71, 198
RsaI GTAC 5 cut(s) 54, 407, 428, 558, 653
RsaNI GTAC 5 cut(s) 53, 406, 427, 557, 652
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 4 cut(s) 71, 198, 304, 703
Sau96I GGNCC 3 cut(s) 101, 254, 410
SchI GAGTC 2 cut(s) 239, 704
ScrFI CCNGG 2 cut(s) 223, 465
SfcI CTRYAG 2 cut(s) 422, 536
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 2 cut(s) 254, 410
SnaBI TACGTA 1 cut(s) 52
Sse9I AATT 6 cut(s) 234, 245, 314, 327, 445, 631
SsiI CCGC 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 221, 463
TaaI ACNGT 2 cut(s) 154, 613
TaiI ACGT 4 cut(s) 54, 340, 462, 588
TaqI TCGA 1 cut(s) 149
TasI AATT 6 cut(s) 234, 245, 314, 327, 445, 631
TatI WGTACW 1 cut(s) 651
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 239, 476, 536
TspGWI ACGGA 2 cut(s) 153, 423
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 254, 410
XapI RAATTY 3 cut(s) 245, 314, 631
XmiI GTMKAC 1 cut(s) 572
ZraI GACGTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.