Rh3CG173900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0022695
Physical Location & Seq
Forward (+)
15239274 .. 15240787
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG173900.1

Sequence Viewer

Length: 786 bp
ATGAATGTCTTAATTTCATATTCATATGCACCTGATCAACCCTTTAGTTTCGATCGCTCACAGTCGCTCTCTGCTGATCAGTGTTCACCATCCCATATATATGAGTTGCAGAGTTCCGATGGATCCTTTGGCCGAGTAGCTTTAAAAGTTGGCCCCTATGGAGGCACCGGTGGCGACACTTGGGATGACGGAGTTTACTCGACGGTGAGGGTGGTGGACATAGTTCACGATTCAGCCTGCGTTTTTGGGATCCAGACTAAATATAAGAGTGCCGGGGATGAGTCAATTTGGTCAGAATTTCATGGTCCAAAGAGAGCAGATTACAATAAATCTATAAGCAGTGTCAGGCTTGATGATCCAGACGAATTTCTGGTTGCAATTTTTGGACGTCATGTATCAGATTGGTTCACGCCAACCCACATTGCCTCGCTTACTTTCAAGAGCAACAAGAGTGTGTACGGACCATTTGGACTGCAGTACCCATTCGTCGTAAATAATTTCGCAATCCACGTCCCAGGGTATAAGATTGTTGGACTTCATGGCAGGTTTGACAAGTGGTTTTGGTTTCGTGCCATCGGAGCTTACCTACAGCCTATTCATCATCAGGTACCGCCTACCAAGTCTACTTATGTCAACGTTTCTTCTAATGAGATTTCAGGGACTGTGGGTAACAAAATCGGAAATTTCTCTGTCGCTAATAAGTACAGAGTTGTCAACAACATCTATAACAACACATCAGCTCAACCAACACCGGATCATGACTCTTCGGTGGAGACTGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

261

Amino Acids

28.92

Weight (kDa)

6.18

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 50 - 195 1.1e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022695)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0470411
rosa_samantha Rh3AG158900 Rh3BG183400 Rh3CG173900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 391
Acc36I ACCTGC 1 cut(s) 534
Acc65I GGTACC 1 cut(s) 607
AccB1I GGYRCC 2 cut(s) 164, 607
AccI GTMKAC 1 cut(s) 623
AciI CCGC 1 cut(s) 611
AclI AACGTT 1 cut(s) 636
AclWI GGATC 6 cut(s) 117, 130, 244, 257, 350, 762
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 296, 365, 682
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 4 cut(s) 458, 479, 609, 704
AfiI CCNNNNNNNGG 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 439
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 3 cut(s) 140, 581, 740
AluI AGCT 3 cut(s) 140, 581, 740
Alw26I GTCTC 1 cut(s) 767
AlwI GGATC 6 cut(s) 117, 130, 244, 257, 350, 762
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 2 cut(s) 130, 151
ApoI RAATTY 3 cut(s) 296, 365, 682
AsiGI ACCGGT 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 152, 305, 461
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 78, 217
AvaII GGWCC 2 cut(s) 305, 461
BaeI ACNNNNGTAYC 2 cut(s) 461, 494
BamHI GGATCC 2 cut(s) 122, 249
BanI GGYRCC 2 cut(s) 164, 607
BccI CCATC 3 cut(s) 97, 113, 581
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 2 cut(s) 34, 76
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 767
BfmI CTRYAG 2 cut(s) 473, 587
BfuAI ACCTGC 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 274, 516
Bme18I GGWCC 2 cut(s) 305, 461
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 3 cut(s) 152, 305, 461
BmiI GGNNCC 5 cut(s) 124, 154, 166, 251, 609
BmrFI CCNGG 2 cut(s) 274, 516
BpuMI CCSGG 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 3 cut(s) 273, 514, 515
BsaWI WCCGGW 2 cut(s) 167, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 781
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 3 cut(s) 273, 514, 515
BseGI GGATG 3 cut(s) 89, 190, 283
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 781
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 132, 153
BshNI GGYRCC 2 cut(s) 164, 607
BshTI ACCGGT 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 168, 273, 752
BslFI GGGAC 2 cut(s) 497, 673
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 767
BsmFI GGGAC 2 cut(s) 497, 673
BsnI GGCC 2 cut(s) 132, 153
Bsp143I GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
BspACI CCGC 1 cut(s) 611
BspANI GGCC 2 cut(s) 132, 153
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 5 cut(s) 124, 154, 166, 251, 609
BspMAI CTGCAG 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 6 cut(s) 117, 130, 244, 257, 350, 762
BspT107I GGYRCC 2 cut(s) 164, 607
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 781
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 273, 514, 515
BssMI GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
BssNI GRCGYC 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 63, 205, 664
Bst6I CTCTTC 1 cut(s) 769
BstACI GRCGYC 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 238
BstF5I GGATG 3 cut(s) 89, 190, 283
BstKTI GATC 7 cut(s) 37, 55, 79, 125, 252, 358, 757
BstMAI GTCTC 1 cut(s) 767
BstMBI GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 171, 578
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 2 cut(s) 272, 514
BstSFI CTRYAG 2 cut(s) 473, 587
BstX2I RGATCY 2 cut(s) 122, 249
BstYI RGATCY 2 cut(s) 122, 249
BsuRI GGCC 2 cut(s) 132, 153
BtrI CACGTC 1 cut(s) 511
BtsCI GGATG 3 cut(s) 89, 190, 283
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 86, 346
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 1 cut(s) 757
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 152, 305, 461
Csp6I GTAC 4 cut(s) 457, 478, 608, 703
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 4 cut(s) 302, 392, 539, 758
CviJI RGCY 8 cut(s) 132, 140, 153, 236, 349, 581, 592, 740
CviKI_1 RGCY 8 cut(s) 132, 140, 153, 236, 349, 581, 592, 740
CviQI GTAC 4 cut(s) 457, 478, 608, 703
DpnI GATC 7 cut(s) 36, 54, 78, 124, 251, 357, 756
DpnII GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
DraI TTTAAA 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 769
EarI CTCTTC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 305, 461
EcoRII CCWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 305, 395, 542, 761
FaqI GGGAC 2 cut(s) 497, 673
FatI CATG 4 cut(s) 301, 391, 538, 757
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 2 cut(s) 34, 76
FblI GTMKAC 1 cut(s) 623
FokI GGATG 3 cut(s) 76, 197, 290
HaeIII GGCC 2 cut(s) 132, 153
HapII CCGG 3 cut(s) 168, 273, 752
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 4 cut(s) 305, 395, 542, 761
HincII GTYRAC 2 cut(s) 634, 715
HindII GTYRAC 2 cut(s) 634, 715
HinfI GANTC 3 cut(s) 230, 281, 761
HpaII CCGG 3 cut(s) 168, 273, 752
HphI GGTGA 2 cut(s) 78, 217
Hpy166II GTNNAC 9 cut(s) 86, 196, 217, 226, 408, 457, 624, 634, 715
Hpy188I TCNGA 5 cut(s) 118, 295, 400, 578, 680
Hpy188III TCNNGA 5 cut(s) 227, 253, 359, 439, 758
Hpy8I GTNNAC 9 cut(s) 86, 196, 217, 226, 408, 457, 624, 634, 715
Hpy99I CGWCG 2 cut(s) 205, 491
HpyCH4III ACNGT 3 cut(s) 63, 205, 664
HpyCH4IV ACGT 3 cut(s) 388, 510, 636
HpyCH4V TGCA 4 cut(s) 29, 109, 377, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 578
HpySE526I ACGT 3 cut(s) 388, 510, 636
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 4 cut(s) 305, 395, 542, 761
KpnI GGTACC 1 cut(s) 611
Ksp22I TGATCA 2 cut(s) 34, 76
Kzo9I GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
LmnI GCTCC 1 cut(s) 578
MaeII ACGT 3 cut(s) 388, 510, 636
MaeIII GTNAC 1 cut(s) 668
MalI GATC 7 cut(s) 36, 54, 78, 124, 251, 357, 756
MboI GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
MboII GAAGA 2 cut(s) 633, 756
MflI RGATCY 2 cut(s) 122, 249
MluCI AATT 7 cut(s) 12, 285, 296, 365, 378, 496, 682
MlyI GAGTC 2 cut(s) 290, 755
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 3 cut(s) 155, 201, 436
MseI TTAA 2 cut(s) 11, 143
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 3 cut(s) 168, 273, 752
MspR9I CCNGG 2 cut(s) 274, 516
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 2 cut(s) 171, 578
NciI CCSGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 25
NdeII GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
NlaIII CATG 4 cut(s) 305, 395, 542, 761
NlaIV GGNNCC 5 cut(s) 124, 154, 166, 251, 609
NmeAIII GCCGAG 1 cut(s) 158
PagI TCATGA 1 cut(s) 757
PasI CCCWGGG 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 167
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 2 cut(s) 289, 755
PpsI GAGTC 2 cut(s) 289, 755
Psp1406I AACGTT 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 5 cut(s) 124, 154, 166, 251, 609
PspPI GGNCC 3 cut(s) 152, 305, 461
PstI CTGCAG 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 2 cut(s) 122, 249
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 4 cut(s) 458, 479, 609, 704
RsaNI GTAC 4 cut(s) 457, 478, 608, 703
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 11, 143
Sau3AI GATC 7 cut(s) 34, 52, 76, 122, 249, 355, 754
Sau96I GGNCC 3 cut(s) 152, 305, 461
SchI GAGTC 2 cut(s) 290, 755
ScrFI CCNGG 2 cut(s) 274, 516
SfcI CTRYAG 2 cut(s) 473, 587
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 305, 461
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 7 cut(s) 12, 285, 296, 365, 378, 496, 682
SsiI CCGC 1 cut(s) 611
StyD4I CCNGG 2 cut(s) 272, 514
TaaI ACNGT 3 cut(s) 63, 205, 664
TaiI ACGT 3 cut(s) 391, 513, 639
TaqI TCGA 2 cut(s) 51, 200
TasI AATT 7 cut(s) 12, 285, 296, 365, 378, 496, 682
TatI WGTACW 1 cut(s) 702
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 11, 143
Tru9I TTAA 2 cut(s) 11, 143
TscAI CASTG 2 cut(s) 86, 346
TspDTI ATGAA 6 cut(s) 6, 12, 17, 290, 527, 587
TspGWI ACGGA 2 cut(s) 204, 474
TspRI CASTG 2 cut(s) 86, 346
VpaK11BI GGWCC 2 cut(s) 305, 461
XapI RAATTY 3 cut(s) 296, 365, 682
XmiI GTMKAC 1 cut(s) 623
ZraI GACGTC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.