RchiOBHm_Chr3g0476311

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029963
Physical Location & Seq
Forward (+)
22252216 .. 22252957
742 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGACTATATACAACTCATCAGATGTCATTGCATCTGTATGCATTAAAACCTACGACTCCAACAGTGATAATTTGAGTGATGCAATTCCAGTTCAACCTGCCACGTCTTCTAGCAACCAAGATGGATGGCATGATCTCCCACTAGTTAATGAAATTAGAGTGACTTCTGATGTCGTTGGAGCTCGGACTGGGAAGTCATCGTCAGTGGAGAGTGTTACCCCATTTATTTGGTCTGGGTCAAGCTCTACTAAAGTCGAACTGGAGCCTAAGTCAAGAGCTGAGATTCCCCTTCAAGTTTGTGTATTCTCTCCCGGAACATTCGATTTGTCAAATTATGTTTTGCATTGGAAACTTTTGCTTTCTAATGGTGATGGTCTACAGTCTTCTGGGGCATGCCAGGGATATCCTTATTTTCTTACCGTGCTCCAGTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPPC-Trs85 TRAPPC9-Trs120

Protein Analysis

145

Amino Acids

15.58

Weight (kDa)

4.61

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_TPPC8_C PF24542 52 - 112 4.8e-09 TPPC8 C-terminal Ig-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029963)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0476311
rosa_multiflora Rmu_co8443945.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 95, 293
AhlI ACTAGT 1 cut(s) 142
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 3 cut(s) 182, 243, 278
AluI AGCT 3 cut(s) 182, 243, 278
Alw21I GWGCWC 2 cut(s) 184, 426
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 380
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 99, 375
Bbv12I GWGCWC 2 cut(s) 184, 426
BccI CCATC 3 cut(s) 116, 120, 365
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 1 cut(s) 312
BcuI ACTAGT 1 cut(s) 142
BfaI CTAG 2 cut(s) 111, 143
BfmI CTRYAG 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 312, 398
BmgBI CACGTC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 312, 398
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 41, 70
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 2 cut(s) 99, 375
BpmI CTGGAG 2 cut(s) 281, 410
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse1I ACTGG 4 cut(s) 89, 193, 264, 427
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 4 cut(s) 89, 193, 264, 427
BsiHKAI GWGCWC 2 cut(s) 184, 426
BsiSI CCGG 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 184, 426
Bsp143I GATC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 4 cut(s) 89, 193, 264, 427
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 65, 381, 421
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 2 cut(s) 267, 279
BstF5I GGATG 1 cut(s) 131
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 310, 396
BstSFI CTRYAG 1 cut(s) 377
BstV2I GAAGAC 2 cut(s) 99, 375
BstXI CCANNNNNNTGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 70, 210
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 394
CviAII CATG 2 cut(s) 131, 393
CviJI RGCY 4 cut(s) 182, 243, 265, 278
CviKI_1 RGCY 4 cut(s) 182, 243, 265, 278
DdeI CTNAG 2 cut(s) 267, 279
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco32I GATATC 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 396
EcoRV GATATC 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 2 cut(s) 134, 396
FaiI YATR 6 cut(s) 8, 10, 40, 132, 336, 394
FatI CATG 2 cut(s) 130, 392
FblI GTMKAC 1 cut(s) 376
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 184
FspBI CTAG 2 cut(s) 111, 143
GsuI CTGGAG 2 cut(s) 281, 410
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 134, 396
HinfI GANTC 2 cut(s) 56, 283
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 22, 169, 186
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 3 cut(s) 65, 381, 421
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 32, 42, 83, 343
HpyF3I CTNAG 2 cut(s) 267, 279
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 2 cut(s) 134, 396
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 3 cut(s) 179, 262, 429
LpnPI CCDG 9 cut(s) 102, 111, 174, 219, 245, 325, 372, 383, 410
LweI GCATC 2 cut(s) 41, 70
MaeI CTAG 2 cut(s) 111, 143
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 160, 214
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 99, 375
MhlI GDGCHC 2 cut(s) 184, 426
MluCI AATT 4 cut(s) 70, 84, 153, 331
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 84, 157
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 2 cut(s) 45, 147
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 312, 398
MvaI CCWGG 1 cut(s) 398
NciI CCSGG 1 cut(s) 312
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 134, 396
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 1 cut(s) 396
PaeI GCATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 310
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 37
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 45, 147
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 312, 398
SduI GDGCHC 2 cut(s) 184, 426
SetI ASST 6 cut(s) 53, 100, 107, 184, 245, 280
SfaNI GCATC 2 cut(s) 41, 70
SfcI CTRYAG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 37
SpeI ACTAGT 1 cut(s) 142
SphI GCATGC 1 cut(s) 396
Sse9I AATT 4 cut(s) 70, 84, 153, 331
SspMI CTAG 2 cut(s) 111, 143
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 310, 396
TaaI ACNGT 3 cut(s) 65, 381, 421
TaiI ACGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 255, 321
TasI AATT 4 cut(s) 70, 84, 153, 331
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 2 cut(s) 45, 147
Tru9I TTAA 2 cut(s) 45, 147
TscAI CASTG 2 cut(s) 70, 210
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 2 cut(s) 70, 210
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 2 cut(s) 111, 143
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.