RchiOBHm_Chr3g0478251

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029981
Physical Location & Seq
Forward (+)
24055421 .. 24056534
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGCAGCCATGCAACATACCCTTGTTTTCAGGATCAGGAAAGCATCCCTCCGGTCAACAGAGATTGATTTTTGTCGGTAAGCAATTGGAAGATTGTAGAACTCTTGCAGATTATAACATCCATAAGGAGTCAACTCTTTCCCTGGTTTTGAGGCTGAGGGGTGGAACCATGATTAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTTCGGTGCAACCAAGAAGAAATATGACTGATCTGTTCCAGAGATTTGGTTGCAAATGTGGCAGTGCTCCATATCTTGGTTACCATATAATTGGTCTTGGAGATGACAAAACCGCTAAAGACTACAACATTGAGGGTGGCTCTGTCCATTTAGTGCTTGCACTCCGTGGTGGTTGTCTACAAATTGTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

8.88

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 16 - 53 7.3e-11 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029981)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0478251
rosa_samantha Rh3BG250200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccB7I CCANNNNNTGG 1 cut(s) 281
AccI GTMKAC 1 cut(s) 382
AciI CCGC 1 cut(s) 318
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 281
AjnI CCWGG 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 274
AlwI GGATC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 143
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 329, 361
Bpu10I CCTNAGC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 141, 370
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 141, 370
BseGI GGATG 2 cut(s) 43, 117
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 32, 235
BspACI CCGC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 141, 370
BssMI GATC 2 cut(s) 32, 235
Bst2UI CCWGG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 2 cut(s) 43, 117
BstKTI GATC 2 cut(s) 35, 238
BstMBI GATC 2 cut(s) 32, 235
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 143
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 2 cut(s) 251, 296
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 2 cut(s) 43, 117
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 363
CviAII CATG 2 cut(s) 9, 169
CviJI RGCY 3 cut(s) 7, 154, 345
CviKI_1 RGCY 3 cut(s) 7, 154, 345
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 34, 237
DpnII GATC 2 cut(s) 32, 235
DraIII CACNNNGTG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 12, 172
FaiI YATR 9 cut(s) 10, 17, 114, 123, 170, 230, 277, 291, 293
FatI CATG 2 cut(s) 8, 168
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 30, 104
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 51
Hin1II CATG 2 cut(s) 12, 172
HincII GTYRAC 2 cut(s) 56, 132
HindII GTYRAC 2 cut(s) 56, 132
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 3 cut(s) 56, 132, 383
Hpy188III TCNNGA 3 cut(s) 30, 36, 244
Hpy8I GTNNAC 3 cut(s) 56, 132, 383
HpyAV CCTTC 1 cut(s) 216
HpyCH4V TGCA 6 cut(s) 4, 12, 107, 214, 258, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 2 cut(s) 12, 172
Kzo9I GATC 2 cut(s) 32, 235
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 6 cut(s) 15, 21, 64, 128, 155, 257
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 34, 237
MboI GATC 2 cut(s) 32, 235
MboII GAAGA 2 cut(s) 101, 234
MfeI CAATTG 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 4 cut(s) 83, 201, 294, 387
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 6 cut(s) 58, 144, 150, 181, 190, 331
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 2 cut(s) 32, 235
NlaIII CATG 2 cut(s) 12, 172
NlaIV GGNNCC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 32, 235
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 1 cut(s) 52
Sse9I AATT 4 cut(s) 83, 201, 294, 387
SsiI CCGC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 141
TasI AATT 4 cut(s) 83, 201, 294, 387
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 281
XapI RAATTY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.