Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0478251 |
| rosa_samantha | Rh3BG250200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 114 |
| AclWI | GGATC | 1 cut(s) | 40 |
| AjnI | CCWGG | 1 cut(s) | 141 |
| AlwI | GGATC | 1 cut(s) | 40 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| BbvCI | CCTCAGC | 1 cut(s) | 155 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BciT130I | CCWGG | 1 cut(s) | 143 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme1390I | CCNGG | 1 cut(s) | 143 |
| BmiI | GGNNCC | 1 cut(s) | 166 |
| BmrFI | CCNGG | 1 cut(s) | 143 |
| BmsI | GCATC | 1 cut(s) | 52 |
| Bpu10I | CCTNAGC | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| BsaWI | WCCGGW | 1 cut(s) | 50 |
| BseBI | CCWGG | 1 cut(s) | 143 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 2 cut(s) | 43, 117 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BsiSI | CCGG | 1 cut(s) | 51 |
| Bsp143I | GATC | 1 cut(s) | 32 |
| BspCNI | CTCAG | 1 cut(s) | 147 |
| BspLI | GGNNCC | 1 cut(s) | 166 |
| BspPI | GGATC | 1 cut(s) | 40 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 143 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstF5I | GGATG | 2 cut(s) | 43, 117 |
| BstKTI | GATC | 1 cut(s) | 35 |
| BstMBI | GATC | 1 cut(s) | 32 |
| BstNI | CCWGG | 1 cut(s) | 143 |
| BstSCI | CCNGG | 1 cut(s) | 141 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BtsCI | GGATG | 2 cut(s) | 43, 117 |
| CviAII | CATG | 2 cut(s) | 9, 169 |
| CviJI | RGCY | 2 cut(s) | 7, 154 |
| CviKI_1 | RGCY | 2 cut(s) | 7, 154 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DpnI | GATC | 1 cut(s) | 34 |
| DpnII | GATC | 1 cut(s) | 32 |
| EcoRII | CCWGG | 1 cut(s) | 141 |
| FaeI | CATG | 2 cut(s) | 12, 172 |
| FaiI | YATR | 5 cut(s) | 10, 17, 114, 123, 170 |
| FatI | CATG | 2 cut(s) | 8, 168 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| FokI | GGATG | 2 cut(s) | 30, 104 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 51 |
| Hin1II | CATG | 2 cut(s) | 12, 172 |
| HincII | GTYRAC | 2 cut(s) | 56, 132 |
| HindII | GTYRAC | 2 cut(s) | 56, 132 |
| HinfI | GANTC | 1 cut(s) | 128 |
| HpaII | CCGG | 1 cut(s) | 51 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 132 |
| Hpy188III | TCNNGA | 2 cut(s) | 30, 36 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 132 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 12, 107 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| Hsp92II | CATG | 2 cut(s) | 12, 172 |
| Kzo9I | GATC | 1 cut(s) | 32 |
| LpnPI | CCDG | 5 cut(s) | 15, 21, 64, 128, 155 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 1 cut(s) | 52 |
| MalI | GATC | 1 cut(s) | 34 |
| MboI | GATC | 1 cut(s) | 32 |
| MboII | GAAGA | 1 cut(s) | 101 |
| MfeI | CAATTG | 1 cut(s) | 83 |
| MluCI | AATT | 1 cut(s) | 83 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 3 cut(s) | 58, 144, 150 |
| MseI | TTAA | 1 cut(s) | 174 |
| MspI | CCGG | 1 cut(s) | 51 |
| MspR9I | CCNGG | 1 cut(s) | 143 |
| MunI | CAATTG | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 143 |
| NdeII | GATC | 1 cut(s) | 32 |
| NlaIII | CATG | 2 cut(s) | 12, 172 |
| NlaIV | GGNNCC | 1 cut(s) | 166 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PleI | GAGTC | 1 cut(s) | 136 |
| PpsI | GAGTC | 1 cut(s) | 136 |
| PsiI | TTATAA | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 141 |
| PspGI | CCWGG | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 1 cut(s) | 166 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 1 cut(s) | 32 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 1 cut(s) | 143 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SgeI | CNNG | 8 cut(s) | 21, 34, 42, 48, 63, 116, 154, 155 |
| Sse9I | AATT | 1 cut(s) | 83 |
| StyD4I | CCNGG | 1 cut(s) | 141 |
| TasI | AATT | 1 cut(s) | 83 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TseI | GCWGC | 1 cut(s) | 4 |