TRAF-type zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0486371 |
| rosa_rugosa | Rorug03G0224800 |
| rosa_samantha | Rh3AG274800 Rh3BG309900 Rh3CG309100 |
| rosa_wichuraiana | Rw3G024490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 221 |
| AcoI | YGGCCR | 1 cut(s) | 222 |
| AcsI | RAATTY | 1 cut(s) | 270 |
| AgsI | TTSAA | 3 cut(s) | 56, 71, 202 |
| AluBI | AGCT | 2 cut(s) | 140, 164 |
| AluI | AGCT | 2 cut(s) | 140, 164 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 286 |
| AoxI | GGCC | 1 cut(s) | 222 |
| ApeKI | GCWGC | 2 cut(s) | 164, 167 |
| ApoI | RAATTY | 1 cut(s) | 270 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| AvaII | GGWCC | 1 cut(s) | 89 |
| BbvI | GCAGC | 2 cut(s) | 151, 154 |
| BccI | CCATC | 1 cut(s) | 68 |
| BfaI | CTAG | 2 cut(s) | 156, 295 |
| BisI | GCNGC | 3 cut(s) | 165, 168, 222 |
| BlsI | GCNGC | 3 cut(s) | 166, 169, 223 |
| Bme18I | GGWCC | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| BpuEI | CTTGAG | 1 cut(s) | 126 |
| BseX3I | CGGCCG | 1 cut(s) | 222 |
| BseXI | GCAGC | 2 cut(s) | 151, 154 |
| Bsh1285I | CGRYCG | 1 cut(s) | 225 |
| BshFI | GGCC | 1 cut(s) | 224 |
| BsiEI | CGRYCG | 1 cut(s) | 225 |
| BsnI | GGCC | 1 cut(s) | 224 |
| Bsp143I | GATC | 2 cut(s) | 28, 106 |
| BspACI | CCGC | 1 cut(s) | 221 |
| BspANI | GGCC | 1 cut(s) | 224 |
| BssMI | GATC | 2 cut(s) | 28, 106 |
| BstKTI | GATC | 2 cut(s) | 31, 109 |
| BstMBI | GATC | 2 cut(s) | 28, 106 |
| BstMCI | CGRYCG | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 218 |
| BstV1I | GCAGC | 2 cut(s) | 151, 154 |
| BstZI | CGGCCG | 1 cut(s) | 222 |
| BsuRI | GGCC | 1 cut(s) | 224 |
| CaiI | CAGNNNCTG | 1 cut(s) | 286 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 27, 62 |
| CviJI | RGCY | 3 cut(s) | 140, 164, 224 |
| CviKI_1 | RGCY | 3 cut(s) | 140, 164, 224 |
| DpnI | GATC | 2 cut(s) | 30, 108 |
| DpnII | GATC | 2 cut(s) | 28, 106 |
| EaeI | YGGCCR | 1 cut(s) | 222 |
| EagI | CGGCCG | 1 cut(s) | 222 |
| EclXI | CGGCCG | 1 cut(s) | 222 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 1 cut(s) | 89 |
| Eco52I | CGGCCG | 1 cut(s) | 222 |
| EcoO109I | RGGNCCY | 1 cut(s) | 89 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| FaiI | YATR | 1 cut(s) | 137 |
| Fnu4HI | GCNGC | 3 cut(s) | 165, 168, 222 |
| Fsp4HI | GCNGC | 3 cut(s) | 165, 168, 222 |
| FspBI | CTAG | 2 cut(s) | 156, 295 |
| GluI | GCNGC | 3 cut(s) | 165, 168, 222 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeIII | GGCC | 1 cut(s) | 224 |
| HincII | GTYRAC | 1 cut(s) | 18 |
| HindII | GTYRAC | 1 cut(s) | 18 |
| HinfI | GANTC | 1 cut(s) | 283 |
| Hpy166II | GTNNAC | 2 cut(s) | 18, 130 |
| Hpy188I | TCNGA | 1 cut(s) | 106 |
| Hpy188III | TCNNGA | 2 cut(s) | 189, 202 |
| Hpy8I | GTNNAC | 2 cut(s) | 18, 130 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 3 cut(s) | 7, 38, 280 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 218 |
| Kzo9I | GATC | 2 cut(s) | 28, 106 |
| LpnPI | CCDG | 3 cut(s) | 72, 174, 222 |
| Lsp1109I | GCAGC | 2 cut(s) | 151, 154 |
| MaeI | CTAG | 2 cut(s) | 156, 295 |
| MaeIII | GTNAC | 1 cut(s) | 252 |
| MalI | GATC | 2 cut(s) | 30, 108 |
| MboI | GATC | 2 cut(s) | 28, 106 |
| MboII | GAAGA | 2 cut(s) | 83, 190 |
| MluCI | AATT | 3 cut(s) | 11, 122, 270 |
| MnlI | CCTC | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 218 |
| NdeII | GATC | 2 cut(s) | 28, 106 |
| NmuCI | GTSAC | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 283 |
| PkrI | GCNGC | 3 cut(s) | 166, 169, 223 |
| PpuMI | RGGWCCY | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 89 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| PspPPI | RGGWCCY | 1 cut(s) | 89 |
| PstNI | CAGNNNCTG | 1 cut(s) | 286 |
| SatI | GCNGC | 3 cut(s) | 165, 168, 222 |
| Sau3AI | GATC | 2 cut(s) | 28, 106 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SetI | ASST | 4 cut(s) | 91, 142, 148, 166 |
| SinI | GGWCC | 1 cut(s) | 89 |
| SmlI | CTYRAG | 1 cut(s) | 141 |
| SmoI | CTYRAG | 1 cut(s) | 141 |
| Sse9I | AATT | 3 cut(s) | 11, 122, 270 |
| SsiI | CCGC | 1 cut(s) | 221 |
| SspMI | CTAG | 2 cut(s) | 156, 295 |
| TasI | AATT | 3 cut(s) | 11, 122, 270 |
| TauI | GCSGC | 1 cut(s) | 224 |
| TfiI | GAWTC | 1 cut(s) | 283 |
| TseFI | GTSAC | 1 cut(s) | 252 |
| TseI | GCWGC | 2 cut(s) | 164, 167 |
| Tsp45I | GTSAC | 1 cut(s) | 252 |
| TspDTI | ATGAA | 2 cut(s) | 84, 139 |
| TspGWI | ACGGA | 1 cut(s) | 134 |
| VpaK11BI | GGWCC | 1 cut(s) | 89 |
| XapI | RAATTY | 1 cut(s) | 270 |
| XspI | CTAG | 2 cut(s) | 156, 295 |