Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029951

Physical Location & Seq

Genomic Coordinates Reverse (-)

36670548 .. 36673429

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATGGATGTAGTAGTGAAGAAGGGCTCTTGGTATAGCTATGGGGACCACAGGTTTGTTGGGACAAGTAAATCATTGCAGTACTTGAGAGAGAACCCTGTTCTTCTCGATGAGATAGAGAAGGTATGGATACTTAATAGCTACTATGATCTTTCGACCTCTTGTATTGAACTTGATGCAATACTCTTGTTTTTTTTCCCCACTCTTAATCAATCAATACTTTGCTGCTTTGTTTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

80

Amino Acids

9.36

Weight (kDa)

5.07

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_C	PF21096	2 - 41	2.1e-10	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029951)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0488931
rosa_samantha	Rh3DG323600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	39, 141
AluI	AGCT	2 cut(s)	39, 141
ApeKI	GCWGC	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	59, 76
BsmFI	GGGAC	2 cut(s)	59, 76
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	74
BssMI	GATC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	3 cut(s)	27, 39, 141
CviKI_1	RGCY	3 cut(s)	27, 39, 141
CviQI	GTAC	1 cut(s)	82
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	29
FaiI	YATR	4 cut(s)	36, 42, 127, 147
FaqI	GGGAC	2 cut(s)	59, 76
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	16, 115
HpyCH4V	TGCA	3 cut(s)	79, 179, 238
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	2 cut(s)	37, 111
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	166
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	31, 95
MhlI	GDGCHC	1 cut(s)	29
MnlI	CCTC	1 cut(s)	169
MseI	TTAA	2 cut(s)	135, 207
NdeII	GATC	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	135, 207
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	5 cut(s)	41, 56, 126, 143, 161
SfaNI	GCATC	1 cut(s)	166
SgeI	CNNG	9 cut(s)	42, 64, 78, 97, 110, 119, 174, 185, 199
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
TaqI	TCGA	2 cut(s)	108, 155
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	135, 207
Tru9I	TTAA	2 cut(s)	135, 207
TseI	GCWGC	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.