Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0029951

Physical Location & Seq

Genomic Coordinates Reverse (-)

35312712 .. 35314048

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG323600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGGATGTAGTAGTGAAGAAGGGCTCTTGGTATAGCTATGGGGACCACAGGTTGGGACAAGGAAGAGATAAATCATTGCAGTACTTGAGAGAGAACCCTGTTCTTCTCGATGAGAAAGAGAAGGTACGGATACTTAATAGCTACTATGAACTTTCGATCTCTTGTATTGAACTTGATGCAATACTCTTGTTTTTTTCCCCACTCTTAATCAATCAATACTTTGCTGCTTTGTTTTGCACTAATAGTGGTCAAGACATGCTACATTGTTTGGATGATTATTGTTTTACTTTCCCAATAATGTTAAGTTTTCAAATGGAAATGAGTGTTGTCATTCTTTTGCATTGTTCCTTGTCTGGAAGTTTTGGGGTTTTGTCTTGTTTCTTGAGTGAGATTTTATTTGTGTTAAACAGGGAGAACATCATTGTGTTGCATGTTACAATTTATAGAGAATTTAGACATAAATTGCTTTGGCAGTCAACTGACTCAACTCTATGGATTAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

169

Amino Acids

19.77

Weight (kDa)

5.68

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_C	PF21096	2 - 41	9.8e-16	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0029951)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0488931
rosa_samantha	Rh3DG323600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	452, 504
AfaI	GTAC	2 cut(s)	86, 129
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	173, 314
AluBI	AGCT	2 cut(s)	39, 144
AluI	AGCT	2 cut(s)	39, 144
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	452, 504
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	109, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	13, 280
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	59, 72
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	59, 72
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	77
BssMI	GATC	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	13, 280
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstNSI	RCATGY	2 cut(s)	262, 437
BstV1I	GCAGC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	13, 280
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	85, 128
CviAII	CATG	2 cut(s)	259, 434
CviJI	RGCY	3 cut(s)	27, 39, 144
CviKI_1	RGCY	3 cut(s)	27, 39, 144
CviQI	GTAC	2 cut(s)	85, 128
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	2 cut(s)	262, 437
FaiI	YATR	8 cut(s)	36, 42, 150, 260, 435, 447, 462, 496
FaqI	GGGAC	2 cut(s)	59, 72
FatI	CATG	2 cut(s)	258, 433
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	20, 287
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	262, 437
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	1 cut(s)	485
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188III	TCNNGA	4 cut(s)	110, 254, 357, 385
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	2 cut(s)	16, 118
HpyCH4V	TGCA	5 cut(s)	82, 182, 240, 343, 433
Hsp92II	CATG	2 cut(s)	262, 437
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	4 cut(s)	37, 114, 342, 397
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	31, 78, 98
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	441, 452, 464, 504
MlyI	GAGTC	1 cut(s)	479
MseI	TTAA	5 cut(s)	138, 209, 305, 407, 508
MslI	CAYNNNNRTG	1 cut(s)	425
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	262, 437
NlaIV	GGNNCC	1 cut(s)	47
NspI	RCATGY	2 cut(s)	262, 437
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	2 cut(s)	86, 129
RsaNI	GTAC	2 cut(s)	85, 128
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	5 cut(s)	138, 209, 305, 407, 508
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	41, 56, 129, 146
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	88, 385
SmoI	CTYRAG	2 cut(s)	88, 385
Sse9I	AATT	4 cut(s)	441, 452, 464, 504
TaqI	TCGA	2 cut(s)	111, 158
TasI	AATT	4 cut(s)	441, 452, 464, 504
TatI	WGTACW	1 cut(s)	84
Tru1I	TTAA	5 cut(s)	138, 209, 305, 407, 508
Tru9I	TTAA	5 cut(s)	138, 209, 305, 407, 508
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	2 cut(s)	452, 504
XceI	RCATGY	2 cut(s)	262, 437
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.