RchiOBHm_Chr3g0491761

Protein of unknown function (DUF493)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
38528009 .. 38529918
1910 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGGTTGTTGCTGTTGAATCCGTAATTCAACAACCCGTCCTTGAGGGTCGTGTCAAGCAGAAGCTATCATCAGGAGGCAAATATGTGTCTGTAAACATTGGTCCTGTTCAAGTCATTTCTAGTGAACATGTCCAAGCTGTATACAATGCAATGAGAAGAGATGACCGGATGAAATACTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

6.84

Weight (kDa)

9.6

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF493 PF04359 2 - 61 4.5e-12 Protein of unknown function (DUF493)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029997)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0491761
rosa_rugosa Rorug03G0125400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 3 cut(s) 17, 29, 110
AluBI AGCT 2 cut(s) 64, 137
AluI AGCT 2 cut(s) 64, 137
AspS9I GGNCC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 101
BfaI CTAG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 156
BseGI GGATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 156
BssNAI GTATAC 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 131
BstZ17I GTATAC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 1 cut(s) 128
CviJI RGCY 2 cut(s) 64, 137
CviKI_1 RGCY 2 cut(s) 64, 137
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 101
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 84, 129, 142
FatI CATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 141
FokI GGATG 1 cut(s) 181
FspBI CTAG 1 cut(s) 120
HapII CCGG 1 cut(s) 166
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 166
Hpy166II GTNNAC 3 cut(s) 94, 125, 142
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 3 cut(s) 94, 125, 142
HpyCH4V TGCA 1 cut(s) 149
Hsp92II CATG 1 cut(s) 131
LpnPI CCDG 3 cut(s) 57, 117, 179
MaeI CTAG 1 cut(s) 120
MboII GAAGA 1 cut(s) 168
MluCI AATT 1 cut(s) 24
MnlI CCTC 2 cut(s) 37, 68
MspI CCGG 1 cut(s) 166
NlaIII CATG 1 cut(s) 131
NspI RCATGY 1 cut(s) 131
PciI ACATGT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 17
PscI ACATGT 1 cut(s) 127
PspPI GGNCC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 101
SetI ASST 2 cut(s) 66, 139
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 24
SspMI CTAG 1 cut(s) 120
TasI AATT 1 cut(s) 24
TfiI GAWTC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 101
XceI RCATGY 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.