Rorug03G0125400

Protein of unknown function (DUF493)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0029997
Physical Location & Seq
Reverse (-)
10093817 .. 10094694
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0125400.1

Sequence Viewer

Length: 603 bp
ATGGGCATGGTATTTGGAAAAATTGCTGTAGAAACCCCAAAATACCAAGTCCTTAAATCCACAGCCGATTACGAAATCCGGCAATATGCACCATCAGTGGCAGCTCAAGTGACGTATGATCCATCAGTGTTCAATGGCAACAGAGACGGTGGGTTTACTGTGCTGGCCAATTACATAGGCGCTCTTGGCAATCCCCAGAACACCAAGCCTGAGAAGATAGCCATGACTGCTCCAGTCATAACCCAGCAAAGCTCGGCTGAAAAGATCGCCATGACAGCCCCTGTTGTGACGAAAGAAGCCGGGGACGCGAAGACGGTGACAATGCAATTCCTGCTGCCTGCTAAGTATCAGAAGGCGGAGGAGGCGCCGAAGCCGGTGGATGAGAGAGTGGTGATTAGGGAAGTGGGGGAGAGGAAGTATGGGGTGGTGACTTTTAGTGGAGTGGCGTCGGAGCAAGTGGTGGAGGATCGGGTGGAGAAGCTGAAGAGGGCTTTGGAGAAAGATGGGTTTAAGATTATAGGGGAGTATTTGCTGGCGAGGTTTAACCCACCTTGGACTCTGCCTGCATTTAGGACTAATGAGGTTATGATCCCAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF493

Protein Analysis

200

Amino Acids

22.05

Weight (kDa)

7.79

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 10 - 84 1.1e-17 SOUL heme-binding protein
SOUL PF04832 84 - 198 1.6e-30 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029997)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0491761
rosa_rugosa Rorug03G0125400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AccII CGCG 1 cut(s) 308
AciI CCGC 1 cut(s) 356
AclWI GGATC 3 cut(s) 113, 474, 583
AcoI YGGCCR 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 503
AcyI GRCGYC 2 cut(s) 365, 446
AgsI TTSAA 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 3 cut(s) 104, 252, 481
AluI AGCT 3 cut(s) 104, 252, 481
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 113, 474, 583
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 101, 334
AspLEI GCGC 2 cut(s) 182, 367
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 328, 403, 439
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 113, 321
BccI CCATC 3 cut(s) 100, 130, 497
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 183, 368
BisI GCNGC 2 cut(s) 102, 335
BlsI GCNGC 2 cut(s) 103, 336
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 301
BsaHI GRCGYC 2 cut(s) 365, 446
BsaJI CCNNGG 2 cut(s) 300, 551
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 233, 593
BseDI CCNNGG 2 cut(s) 300, 551
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 233, 593
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 113, 321
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 364
BsiSI CCGG 3 cut(s) 79, 300, 374
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 118, 264, 466, 588
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 3 cut(s) 113, 474, 583
BspT107I GGYRCC 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 2 cut(s) 233, 593
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 300, 551
BssMI GATC 4 cut(s) 118, 264, 466, 588
BssNI GRCGYC 2 cut(s) 365, 446
BssT1I CCWWGG 1 cut(s) 551
Bst4CI ACNGT 3 cut(s) 149, 160, 316
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 2 cut(s) 365, 446
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 4 cut(s) 165, 339, 534, 564
BstDEI CTNAG 2 cut(s) 210, 342
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 183, 368
BstHHI GCGC 2 cut(s) 182, 367
BstKTI GATC 4 cut(s) 121, 267, 469, 591
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 118, 264, 466, 588
BstMWI GCNNNNNNNGC 6 cut(s) 186, 227, 275, 305, 331, 362
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 113, 321
BstV2I GAAGAC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 102, 132
Cac8I GCNNGC 4 cut(s) 165, 339, 534, 564
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 2 cut(s) 182, 367
Cfr10I RCCGGY 1 cut(s) 373
CseI GACGC 2 cut(s) 314, 435
CviAII CATG 3 cut(s) 7, 223, 271
DdeI CTNAG 2 cut(s) 210, 342
DinI GGCGCC 1 cut(s) 366
DpnI GATC 4 cut(s) 120, 266, 468, 590
DpnII GATC 4 cut(s) 118, 264, 466, 588
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 551
EgeI GGCGCC 1 cut(s) 366
EheI GGCGCC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 551
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 10, 226, 274
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 6, 222, 270
Fnu4HI GCNGC 2 cut(s) 102, 335
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 102, 335
GlaI GCGC 2 cut(s) 181, 366
GluI GCNGC 2 cut(s) 102, 335
GsaI CCCAGC 1 cut(s) 247
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 2 cut(s) 183, 368
HaeIII GGCC 1 cut(s) 167
HapII CCGG 3 cut(s) 79, 300, 374
HgaI GACGC 2 cut(s) 314, 435
HhaI GCGC 2 cut(s) 182, 367
Hin1I GRCGYC 2 cut(s) 365, 446
Hin1II CATG 3 cut(s) 10, 226, 274
Hin6I GCGC 2 cut(s) 180, 365
HinP1I GCGC 2 cut(s) 180, 365
HinfI GANTC 1 cut(s) 556
HpaII CCGG 3 cut(s) 79, 300, 374
HphI GGTGA 3 cut(s) 328, 403, 439
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 351, 451
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 149, 160, 316
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 89, 325, 566
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 227, 275, 305, 331, 362
HpyF3I CTNAG 2 cut(s) 210, 342
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 2 cut(s) 365, 446
Hsp92II CATG 3 cut(s) 10, 226, 274
HspAI GCGC 2 cut(s) 180, 365
KasI GGCGCC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 118, 264, 466, 588
LmnI GCTCC 2 cut(s) 235, 451
Lsp1109I GCAGC 2 cut(s) 113, 321
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 4 cut(s) 109, 286, 316, 427
MalI GATC 4 cut(s) 120, 266, 468, 590
MboI GATC 4 cut(s) 118, 264, 466, 588
MboII GAAGA 3 cut(s) 226, 322, 496
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 21, 169, 326
MluNI TGGCCA 1 cut(s) 167
Mly113I GGCGCC 1 cut(s) 365
MlyI GAGTC 1 cut(s) 550
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 7 cut(s) 352, 355, 405, 457, 480, 531, 574
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 3 cut(s) 54, 510, 543
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 3 cut(s) 79, 300, 374
MspR9I CCNGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 186, 227, 275, 305, 331, 362
NarI GGCGCC 1 cut(s) 365
NciI CCSGG 1 cut(s) 301
NdeII GATC 4 cut(s) 118, 264, 466, 588
NlaIII CATG 3 cut(s) 10, 226, 274
NlaIV GGNNCC 1 cut(s) 366
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 4 cut(s) 109, 286, 316, 427
PkrI GCNGC 2 cut(s) 103, 336
PleI GAGTC 1 cut(s) 550
PluTI GGCGCC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 281
SaqAI TTAA 3 cut(s) 54, 510, 543
SatI GCNGC 2 cut(s) 102, 335
Sau3AI GATC 4 cut(s) 118, 264, 466, 588
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 1 cut(s) 301
SetI ASST 7 cut(s) 106, 116, 254, 483, 542, 553, 585
SfcI CTRYAG 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 3 cut(s) 21, 169, 326
SsiI CCGC 1 cut(s) 356
SspDI GGCGCC 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 149, 160, 316
TaiI ACGT 1 cut(s) 116
TasI AATT 3 cut(s) 21, 169, 326
Tru1I TTAA 3 cut(s) 54, 510, 543
Tru9I TTAA 3 cut(s) 54, 510, 543
TscAI CASTG 2 cut(s) 102, 132
TseFI GTSAC 4 cut(s) 109, 286, 316, 427
TseI GCWGC 2 cut(s) 101, 334
Tsp45I GTSAC 4 cut(s) 109, 286, 316, 427
TspRI CASTG 2 cut(s) 102, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.