DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0493931 |
| rosa_samantha | Rh3BG349200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 317, 356 |
| AciI | CCGC | 1 cut(s) | 422 |
| AfaI | GTAC | 1 cut(s) | 141 |
| AgsI | TTSAA | 1 cut(s) | 104 |
| AluBI | AGCT | 2 cut(s) | 31, 128 |
| AluI | AGCT | 2 cut(s) | 31, 128 |
| ApeKI | GCWGC | 2 cut(s) | 227, 419 |
| BbvI | GCAGC | 2 cut(s) | 239, 406 |
| BccI | CCATC | 1 cut(s) | 342 |
| BfaI | CTAG | 1 cut(s) | 290 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BisI | GCNGC | 2 cut(s) | 228, 420 |
| BlsI | GCNGC | 2 cut(s) | 229, 421 |
| BpmI | CTGGAG | 1 cut(s) | 256 |
| Bse3DI | GCAATG | 1 cut(s) | 247 |
| BseGI | GGATG | 1 cut(s) | 301 |
| BseMI | GCAATG | 1 cut(s) | 247 |
| BseXI | GCAGC | 2 cut(s) | 239, 406 |
| Bsp1407I | TGTACA | 1 cut(s) | 139 |
| Bsp143I | GATC | 1 cut(s) | 375 |
| BspACI | CCGC | 1 cut(s) | 422 |
| BsrDI | GCAATG | 1 cut(s) | 247 |
| BsrGI | TGTACA | 1 cut(s) | 139 |
| BssMI | GATC | 1 cut(s) | 375 |
| BssNAI | GTATAC | 1 cut(s) | 357 |
| Bst1107I | GTATAC | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 3 cut(s) | 14, 65, 80 |
| BstAUI | TGTACA | 1 cut(s) | 139 |
| BstC8I | GCNNGC | 1 cut(s) | 232 |
| BstF5I | GGATG | 1 cut(s) | 301 |
| BstKTI | GATC | 1 cut(s) | 378 |
| BstMBI | GATC | 1 cut(s) | 375 |
| BstNSI | RCATGY | 2 cut(s) | 234, 254 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 2 cut(s) | 239, 406 |
| BstZ17I | GTATAC | 1 cut(s) | 357 |
| BtsCI | GGATG | 1 cut(s) | 301 |
| BtsI | GCAGTG | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| Cac8I | GCNNGC | 1 cut(s) | 232 |
| Csp6I | GTAC | 1 cut(s) | 140 |
| CviAII | CATG | 2 cut(s) | 231, 251 |
| CviJI | RGCY | 4 cut(s) | 5, 31, 128, 408 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 31, 128, 408 |
| CviQI | GTAC | 1 cut(s) | 140 |
| DpnI | GATC | 1 cut(s) | 377 |
| DpnII | GATC | 1 cut(s) | 375 |
| FaeI | CATG | 2 cut(s) | 234, 254 |
| FatI | CATG | 2 cut(s) | 230, 250 |
| FauI | CCCGC | 1 cut(s) | 415 |
| FauNDI | CATATG | 1 cut(s) | 223 |
| FblI | GTMKAC | 2 cut(s) | 317, 356 |
| Fnu4HI | GCNGC | 2 cut(s) | 228, 420 |
| FokI | GGATG | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 2 cut(s) | 228, 420 |
| FspBI | CTAG | 1 cut(s) | 290 |
| GluI | GCNGC | 2 cut(s) | 228, 420 |
| GsuI | CTGGAG | 1 cut(s) | 256 |
| Hin1II | CATG | 2 cut(s) | 234, 254 |
| Hpy166II | GTNNAC | 3 cut(s) | 10, 318, 357 |
| Hpy188I | TCNGA | 1 cut(s) | 344 |
| Hpy8I | GTNNAC | 3 cut(s) | 10, 318, 357 |
| Hpy99I | CGWCG | 1 cut(s) | 167 |
| HpyAV | CCTTC | 1 cut(s) | 339 |
| HpyCH4III | ACNGT | 3 cut(s) | 14, 65, 80 |
| HpyCH4IV | ACGT | 1 cut(s) | 162 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 227 |
| HpySE526I | ACGT | 1 cut(s) | 162 |
| Hsp92II | CATG | 2 cut(s) | 234, 254 |
| Kzo9I | GATC | 1 cut(s) | 375 |
| LmnI | GCTCC | 3 cut(s) | 28, 237, 259 |
| LpnPI | CCDG | 6 cut(s) | 17, 128, 168, 204, 219, 220 |
| Lsp1109I | GCAGC | 2 cut(s) | 239, 406 |
| MaeI | CTAG | 1 cut(s) | 290 |
| MaeII | ACGT | 1 cut(s) | 162 |
| MaeIII | GTNAC | 2 cut(s) | 180, 397 |
| MalI | GATC | 1 cut(s) | 377 |
| MboI | GATC | 1 cut(s) | 375 |
| MboII | GAAGA | 1 cut(s) | 75 |
| MluCI | AATT | 2 cut(s) | 99, 104 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 1 cut(s) | 286 |
| NdeI | CATATG | 1 cut(s) | 223 |
| NdeII | GATC | 1 cut(s) | 375 |
| NlaIII | CATG | 2 cut(s) | 234, 254 |
| NmuCI | GTSAC | 1 cut(s) | 180 |
| NspI | RCATGY | 2 cut(s) | 234, 254 |
| PaeI | GCATGC | 1 cut(s) | 234 |
| PkrI | GCNGC | 2 cut(s) | 229, 421 |
| RsaI | GTAC | 1 cut(s) | 141 |
| RsaNI | GTAC | 1 cut(s) | 140 |
| SatI | GCNGC | 2 cut(s) | 228, 420 |
| Sau3AI | GATC | 1 cut(s) | 375 |
| SetI | ASST | 6 cut(s) | 33, 130, 165, 281, 350, 384 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| SphI | GCATGC | 1 cut(s) | 234 |
| Sse9I | AATT | 2 cut(s) | 99, 104 |
| SsiI | CCGC | 1 cut(s) | 422 |
| SspMI | CTAG | 1 cut(s) | 290 |
| TaaI | ACNGT | 3 cut(s) | 14, 65, 80 |
| TaiI | ACGT | 1 cut(s) | 165 |
| TaqI | TCGA | 1 cut(s) | 378 |
| TasI | AATT | 2 cut(s) | 99, 104 |
| TatI | WGTACW | 1 cut(s) | 139 |
| TscAI | CASTG | 1 cut(s) | 189 |
| TseFI | GTSAC | 1 cut(s) | 180 |
| TseI | GCWGC | 2 cut(s) | 227, 419 |
| Tsp45I | GTSAC | 1 cut(s) | 180 |
| TspDTI | ATGAA | 2 cut(s) | 36, 312 |
| TspRI | CASTG | 1 cut(s) | 189 |
| XceI | RCATGY | 2 cut(s) | 234, 254 |
| XmiI | GTMKAC | 2 cut(s) | 317, 356 |
| XspI | CTAG | 1 cut(s) | 290 |