Rh3BG349200

DNA ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0029935
Physical Location & Seq
Reverse (-)
38921755 .. 38950677
28923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG349200.1

Sequence Viewer

Length: 681 bp
ATGGCTGTTTACCGTAAAAATGAAGGCAGGTCTGATGAGAATGAAGTGGAGCTGGTGGTTGATGCCAAATCAGTTCAGTCCAACTGTGGTATAGACAACTGTTCTTCTGTCCAAAAGAAAATTGAACTAGGGAAAATAGGAGTGGTAGCTGATTTGTCTGTACAGGGGTCATTACCAGATAACGTCGGTGCAACTTCTGTGTCACTACCACCAGAAAAATACAATCCTGTAGAGCATGATACATATGCAGCATGCTGGAGCAATGGACAACATGCTCCATATTTACATCTCGCACGAACCTTTGACTTACAAGAGGATGAAAAAGGCAAGATAAAAGCTACTTCTATGCTTTGCAATATGTTCAGAAGGTCTGGTAAAGTACTCCTTAAGACGAGAAGAGAATTTGTTCGCATAGCCATGGAGAATGGCTATCCCCTGGTTTCAATTTTCTACTTTGGAGCTCCTGAGCTGGATGCTCCCTACAAGTCAAACAATTTGGGTTTACTGATTATACACAAAGCAACAAAACGTCCAAATCTAGAACAAAGTAAGCACCAAGTCATTACTAACCTTCCAAACAGGCATGGCGTCTTGATTGGTTCCCTTCTTGCCCTACTAAGTATACAAGCAAGCAAGTTTGCTGCCGCCATTGCTAATCAACCTGCCAGGAATCTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000012 GO:0000726 GO:0002237 GO:0003006 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0010154 GO:0010225 GO:0010243 GO:0015074 GO:0016070 GO:0016874 GO:0016886 GO:0022414 GO:0022616 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046677 GO:0048316 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051103 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0090351 GO:0140097 GO:1901360 GO:1901576 GO:1901652 GO:1901698 GO:1901700 GO:1904975 GO:2000683 GO:2000685
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430
Pfam Domains
Protein Families
DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DRMBL

Protein Analysis

226

Amino Acids

24.89

Weight (kDa)

8.99

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029935)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0493931
rosa_samantha Rh3BG349200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 18, 670
AccI GTMKAC 1 cut(s) 622
AciI CCGC 1 cut(s) 645
AcsI RAATTY 1 cut(s) 401
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 2 cut(s) 162, 381
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 2 cut(s) 125, 444
AjnI CCWGG 2 cut(s) 435, 665
AluBI AGCT 5 cut(s) 52, 149, 338, 461, 469
AluI AGCT 5 cut(s) 52, 149, 338, 461, 469
Alw21I GWGCWC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 248, 641
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 260, 628
BciT130I CCWGG 2 cut(s) 437, 667
BfaI CTAG 2 cut(s) 128, 539
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 386
BfuAI ACCTGC 2 cut(s) 18, 670
BisI GCNGC 3 cut(s) 249, 642, 645
BlsI GCNGC 3 cut(s) 250, 643, 646
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 437, 667
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 2 cut(s) 437, 667
BmsI GCATC 2 cut(s) 52, 463
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 417, 435
Bse3DI GCAATG 2 cut(s) 268, 648
BseBI CCWGG 2 cut(s) 437, 667
BseDI CCNNGG 2 cut(s) 417, 435
BseGI GGATG 2 cut(s) 322, 478
BseMI GCAATG 2 cut(s) 268, 648
BseMII CTCAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 260, 628
BsiHKAI GWGCWC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 463
Bsp1407I TGTACA 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 1 cut(s) 645
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 2 cut(s) 18, 670
BspTI CTTAAG 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 268, 648
BsrGI TGTACA 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 417, 435
BssNAI GTATAC 1 cut(s) 623
BssNI GRCGYC 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 623
Bst2UI CCWGG 2 cut(s) 437, 667
Bst4CI ACNGT 3 cut(s) 14, 86, 101
Bst6I CTCTTC 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 588
BstAFI CTTAAG 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 253, 631
BstDEI CTNAG 2 cut(s) 465, 617
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 322, 478
BstMWI GCNNNNNNNGC 1 cut(s) 650
BstNI CCWGG 2 cut(s) 437, 667
BstNSI RCATGY 2 cut(s) 255, 275
BstSCI CCNGG 2 cut(s) 435, 665
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 260, 628
BstZ17I GTATAC 1 cut(s) 623
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 322, 478
BveI ACCTGC 2 cut(s) 18, 670
Cac8I GCNNGC 2 cut(s) 253, 631
CseI GACGC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 161, 380
CviAII CATG 5 cut(s) 236, 252, 272, 418, 584
CviJI RGCY 8 cut(s) 5, 52, 149, 338, 416, 429, 461, 469
CviKI_1 RGCY 8 cut(s) 5, 52, 149, 338, 416, 429, 461, 469
CviQI GTAC 2 cut(s) 161, 380
DdeI CTNAG 2 cut(s) 465, 617
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 435, 665
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 239, 255, 275, 421, 587
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 5 cut(s) 235, 251, 271, 417, 583
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 3 cut(s) 249, 642, 645
FokI GGATG 2 cut(s) 329, 485
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 3 cut(s) 249, 642, 645
FspBI CTAG 2 cut(s) 128, 539
GluI GCNGC 3 cut(s) 249, 642, 645
GsuI CTGGAG 1 cut(s) 277
HgaI GACGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 5 cut(s) 239, 255, 275, 421, 587
HinfI GANTC 1 cut(s) 670
Hpy166II GTNNAC 3 cut(s) 10, 503, 623
Hpy188I TCNGA 2 cut(s) 34, 365
Hpy188III TCNNGA 3 cut(s) 464, 539, 592
Hpy8I GTNNAC 3 cut(s) 10, 503, 623
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 4 cut(s) 17, 360, 581, 614
HpyCH4III ACNGT 3 cut(s) 14, 86, 101
HpyCH4IV ACGT 2 cut(s) 183, 529
HpyCH4V TGCA 3 cut(s) 191, 248, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 650
HpyF3I CTNAG 2 cut(s) 465, 617
HpySE526I ACGT 2 cut(s) 183, 529
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 5 cut(s) 239, 255, 275, 421, 587
LmnI GCTCC 6 cut(s) 49, 258, 280, 458, 466, 481
Lsp1109I GCAGC 2 cut(s) 260, 628
LweI GCATC 2 cut(s) 52, 463
MaeI CTAG 2 cut(s) 128, 539
MaeII ACGT 2 cut(s) 183, 529
MaeIII GTNAC 1 cut(s) 201
MboII GAAGA 2 cut(s) 96, 408
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 4 cut(s) 120, 401, 444, 493
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 416
MspCI CTTAAG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 437, 667
MvaI CCWGG 2 cut(s) 437, 667
MwoI GCNNNNNNNGC 1 cut(s) 650
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 244
NlaIII CATG 5 cut(s) 239, 255, 275, 421, 587
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 1 cut(s) 201
NspI RCATGY 2 cut(s) 255, 275
PaeI GCATGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 670
PkrI GCNGC 3 cut(s) 250, 643, 646
Psp124BI GAGCTC 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 435, 665
PspGI CCWGG 2 cut(s) 435, 665
PspN4I GGNNCC 1 cut(s) 601
RsaI GTAC 2 cut(s) 162, 381
RsaNI GTAC 2 cut(s) 161, 380
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 463
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 3 cut(s) 249, 642, 645
ScaI AGTACT 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 437, 667
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 2 cut(s) 52, 463
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SphI GCATGC 1 cut(s) 255
Sse9I AATT 4 cut(s) 120, 401, 444, 493
SsiI CCGC 1 cut(s) 645
SspMI CTAG 2 cut(s) 128, 539
SstI GAGCTC 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 435, 665
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 14, 86, 101
TaiI ACGT 2 cut(s) 186, 532
TasI AATT 4 cut(s) 120, 401, 444, 493
TatI WGTACW 2 cut(s) 160, 379
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 2 cut(s) 248, 641
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 36, 57, 333
Vha464I CTTAAG 1 cut(s) 386
XapI RAATTY 1 cut(s) 401
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 2 cut(s) 255, 275
XmiI GTMKAC 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 2 cut(s) 128, 539
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.