RchiOBHm_Chr3g0494131

LisH domain and HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029369
Physical Location & Seq
Forward (+)
41819305 .. 41822472
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGATGCGTCGTCGTGAGAGAGCAAATGCATTCTGTGAAGCAATCCGTGCTTTAGATGCAACAGATATTTCAGCAACCAGTGTACGAGAATTCCTCCTACCTACCATCCAGAACCTATTGAAGGACTCAGATGCACTGGATCCAGTACACAAGGAAGCCCTTGAAATTATAATGAAGGAGAGATCTGGTGGTACCTTTGAGACCATCAGTAAGGTGATGGGTGCTGGACTTGCATCCTCTGTGAGTAGTTTCTTTGGTGAAGGTGGGCTACTGGGCAAGAAGGATAGTGTTGAGCCACTGCCAGAGCCAGCTGAGTCCCCGAAGTCTGCACCACTGCCACCAGTAGAGGACACTAGATTAAGGCGCATTATGAGGGGAAATTTCACTGACATGCTCAGAGGCAAAGTAAAGGGCCAAGACGAAACTCAGAACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.92

Weight (kDa)

5.92

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029369)

Species Orthologous Gene IDs
pyrus_communis pycom09g17160
rosa_chinensis RchiOBHm_Chr3g0494131

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 191
AclWI GGATC 2 cut(s) 134, 147
AcsI RAATTY 2 cut(s) 89, 379
AfaI GTAC 3 cut(s) 84, 147, 193
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 121, 164
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 2 cut(s) 134, 147
AoxI GGCC 1 cut(s) 412
ApoI RAATTY 2 cut(s) 89, 379
Asp718I GGTACC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 226, 269
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BccI CCATC 3 cut(s) 113, 211, 212
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 354
BglII AGATCT 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 2 cut(s) 141, 193
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 3 cut(s) 46, 121, 242
BmuI ACTGGG 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BsaI GGTCTC 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 5 cut(s) 78, 141, 143, 276, 341
BseGI GGATG 2 cut(s) 105, 233
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 3 cut(s) 141, 303, 409
BseNI ACTGG 5 cut(s) 78, 141, 143, 276, 341
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 139, 182
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 3 cut(s) 140, 304, 408
BspLI GGNNCC 2 cut(s) 141, 193
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 5 cut(s) 78, 141, 143, 276, 341
BssMI GATC 2 cut(s) 139, 182
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 127, 312, 395, 426
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 105, 233
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 2 cut(s) 142, 185
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 139, 182
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 230
BstNSI RCATGY 1 cut(s) 394
BstX2I RGATCY 2 cut(s) 139, 182
BstYI RGATCY 2 cut(s) 139, 182
BsuRI GGCC 1 cut(s) 414
BtsCI GGATG 2 cut(s) 105, 233
BtsI GCAGTG 2 cut(s) 296, 332
BtsIMutI CAGTG 5 cut(s) 85, 134, 296, 332, 384
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 412
Csp6I GTAC 3 cut(s) 83, 146, 192
CviAII CATG 1 cut(s) 391
CviJI RGCY 6 cut(s) 158, 268, 295, 307, 311, 414
CviKI_1 RGCY 6 cut(s) 158, 268, 295, 307, 311, 414
CviQI GTAC 3 cut(s) 83, 146, 192
DdeI CTNAG 4 cut(s) 127, 312, 395, 426
DpnI GATC 2 cut(s) 141, 184
DpnII GATC 2 cut(s) 139, 182
Eco31I GGTCTC 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 1 cut(s) 394
FaiI YATR 3 cut(s) 170, 371, 392
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 390
FokI GGATG 2 cut(s) 92, 220
FspBI CTAG 1 cut(s) 354
GlaI GCGC 1 cut(s) 365
HaeIII GGCC 1 cut(s) 414
HhaI GCGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 2 cut(s) 125, 314
HphI GGTGA 2 cut(s) 226, 269
Hpy166II GTNNAC 2 cut(s) 83, 148
Hpy188I TCNGA 3 cut(s) 130, 398, 429
Hpy188III TCNNGA 2 cut(s) 14, 109
Hpy8I GTNNAC 2 cut(s) 83, 148
Hpy99I CGWCG 2 cut(s) 12, 15
HpyAV CCTTC 4 cut(s) 115, 169, 254, 274
HpyCH4V TGCA 5 cut(s) 29, 59, 134, 233, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 230
HpyF3I CTNAG 4 cut(s) 127, 312, 395, 426
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 1 cut(s) 364
KpnI GGTACC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 139, 182
LweI GCATC 3 cut(s) 46, 121, 242
MaeI CTAG 1 cut(s) 354
MalI GATC 2 cut(s) 141, 184
MboI GATC 2 cut(s) 139, 182
MflI RGATCY 2 cut(s) 139, 182
MluCI AATT 3 cut(s) 89, 165, 379
MlyI GAGTC 2 cut(s) 119, 323
MnlI CCTC 5 cut(s) 104, 247, 340, 366, 392
Mph1103I ATGCAT 1 cut(s) 31
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 230
NdeII GATC 2 cut(s) 139, 182
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 2 cut(s) 141, 193
NsiI ATGCAT 1 cut(s) 31
NspI RCATGY 1 cut(s) 394
PctI GAATGC 1 cut(s) 29
PleI GAGTC 2 cut(s) 119, 322
PpsI GAGTC 2 cut(s) 119, 322
PsiI TTATAA 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 141, 193
PspPI GGNCC 1 cut(s) 412
PsuI RGATCY 2 cut(s) 139, 182
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 3 cut(s) 84, 147, 193
RsaNI GTAC 3 cut(s) 83, 146, 192
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 1 cut(s) 359
Sau3AI GATC 2 cut(s) 139, 182
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 2 cut(s) 119, 323
SetI ASST 6 cut(s) 103, 117, 197, 216, 265, 313
SfaNI GCATC 3 cut(s) 46, 121, 242
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 3 cut(s) 89, 165, 379
SspMI CTAG 1 cut(s) 354
TasI AATT 3 cut(s) 89, 165, 379
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 5 cut(s) 85, 141, 303, 339, 391
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 5 cut(s) 85, 141, 303, 339, 391
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 2 cut(s) 89, 379
XceI RCATGY 1 cut(s) 394
XspI CTAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.