Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030005

Physical Location & Seq

Genomic Coordinates Reverse (-)

44160354 .. 44160746

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAACTCGAAGAATTCAGTAGCTAAACAACTTGGTTTGGATGTTGATCCGAATCTAAATCACAGCTTTCCATCCATGGTGACGAGGAATCGAACTTTGCTTTACAGAAAGTACAAGGATGCCTTGAAGACCGTCTGCTCTCTCGTGAGCTCCTCCGCCTCAGCGTCCACCAGCTCCAGCGTCTGTGGTTCGGTCATCAAATTGTCATTGCTTATGCATAAGAATAGATCCTATGCTCTGCTCAGTACTGAAGATCCTGGGGTTCTGAATTGGAAGTGTGGAATGCATGGTTTACTTGAACTGACCTACATTCAGTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

107

Amino Acids

11.78

Weight (kDa)

9.47

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030005)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0494921
rosa_samantha	Rh3AG317600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	3 cut(s)	41, 222, 248
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	113, 247
AgsI	TTSAA	3 cut(s)	127, 299, 319
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	23, 66, 150, 174
AluI	AGCT	4 cut(s)	23, 66, 150, 174
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	41, 222, 248
AlwNI	CAGNNNCTG	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	160
BsaBI	GATNNNNATC	2 cut(s)	45, 51
BsaJI	CCNNGG	2 cut(s)	75, 257
Bse3DI	GCAATG	1 cut(s)	206
Bse8I	GATNNNNATC	2 cut(s)	45, 51
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	75, 257
BseGI	GGATG	3 cut(s)	46, 71, 124
BseJI	GATNNNNATC	2 cut(s)	45, 51
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	174, 256
BseRI	GAGGAG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	46, 227, 253
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	173, 255
BspPI	GGATC	3 cut(s)	41, 222, 248
BsrDI	GCAATG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	75, 257
BssMI	GATC	3 cut(s)	46, 227, 253
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	160, 242
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	46, 71, 124
BstKTI	GATC	3 cut(s)	49, 230, 256
BstMBI	GATC	3 cut(s)	46, 227, 253
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	227, 253
BstYI	RGATCY	2 cut(s)	227, 253
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	46, 71, 124
CaiI	CAGNNNCTG	1 cut(s)	183
CseI	GACGC	2 cut(s)	153, 169
Csp6I	GTAC	2 cut(s)	112, 246
CviAII	CATG	2 cut(s)	76, 287
CviJI	RGCY	4 cut(s)	23, 66, 150, 174
CviKI_1	RGCY	4 cut(s)	23, 66, 150, 174
CviQI	GTAC	2 cut(s)	112, 246
DdeI	CTNAG	2 cut(s)	160, 242
DpnI	GATC	3 cut(s)	48, 229, 255
DpnII	GATC	3 cut(s)	46, 227, 253
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	2 cut(s)	219, 288
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	79, 290
FaiI	YATR	5 cut(s)	77, 215, 219, 234, 288
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	2 cut(s)	75, 286
FokI	GGATG	3 cut(s)	53, 58, 131
FriOI	GRGCYC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	160
HgaI	GACGC	2 cut(s)	153, 169
Hin1II	CATG	2 cut(s)	79, 290
HinfI	GANTC	2 cut(s)	52, 88
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	168, 293
Hpy188I	TCNGA	2 cut(s)	51, 267
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	168, 293
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	217, 286
HpyF3I	CTNAG	2 cut(s)	160, 242
Hsp92II	CATG	2 cut(s)	79, 290
Kzo9I	GATC	3 cut(s)	46, 227, 253
LmnI	GCTCC	2 cut(s)	155, 179
LpnPI	CCDG	4 cut(s)	184, 190, 243, 270
LweI	GCATC	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	48, 229, 255
MboI	GATC	3 cut(s)	46, 227, 253
MboII	GAAGA	3 cut(s)	22, 139, 263
MflI	RGATCY	2 cut(s)	227, 253
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	4 cut(s)	13, 200, 268, 319
MnlI	CCTC	3 cut(s)	78, 163, 169
Mph1103I	ATGCAT	2 cut(s)	219, 288
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	46, 227, 253
NlaIII	CATG	2 cut(s)	79, 290
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	2 cut(s)	219, 288
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	52, 88
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	227, 253
RsaI	GTAC	2 cut(s)	113, 247
RsaNI	GTAC	2 cut(s)	112, 246
SacI	GAGCTC	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	46, 227, 253
ScaI	AGTACT	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	5 cut(s)	25, 68, 152, 176, 308
SfaNI	GCATC	1 cut(s)	109
Sse9I	AATT	4 cut(s)	13, 200, 268, 319
SsiI	CCGC	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	8, 91
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	13, 200, 268, 319
TatI	WGTACW	2 cut(s)	111, 245
TfiI	GAWTC	2 cut(s)	52, 88
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	247
Zsp2I	ATGCAT	2 cut(s)	219, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.