Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0030005

Physical Location & Seq

Genomic Coordinates Reverse (-)

43827157 .. 43828002

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGACGAGGAATCGAACTTTGCTTTACAGAAAGTACAAGGATGCCTTGAAGACCGTCTGCTCTCTCGTGAGCTCCTCCGCCTCAGCGTCCACCAGCTCCAGCGTCTGTGGTTCGGTCATCAAATTGTCATTGCTTATGCATAAGAATAGATCCTATGCTCTGCTCAGTACTGAAGATCCTGTTATTGCTTTTGGTCTCCTTGGACTCAAAATTATTATCAGACTAGAAATTGTCAATCTCATTGCATATCATGTGTTTAGGAGAAGAAGCCCTATATGGACAAAATTGCATGCTGAGCTTAAAGCTGAGTACAAAAAGACCTTAGAGACTGAAGATGATGATGCTGAAGATGGTGATGGTGAAGCTGAAGATGTTTCAAAAAAGGAATGCCAGAGAAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

135

Amino Acids

15.23

Weight (kDa)

9.15

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030005)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0494921
rosa_samantha	Rh3AG317600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	147, 173
AcuI	CTGAAG	4 cut(s)	195, 354, 369, 390
AfaI	GTAC	3 cut(s)	38, 172, 314
AgsI	TTSAA	2 cut(s)	52, 381
AluBI	AGCT	5 cut(s)	75, 99, 301, 308, 368
AluI	AGCT	5 cut(s)	75, 99, 301, 308, 368
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	203, 323
AlwI	GGATC	2 cut(s)	147, 173
AlwNI	CAGNNNCTG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	16, 368, 374
BanII	GRGCYC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	347, 353
BcoDI	GTCTC	2 cut(s)	203, 323
BfaI	CTAG	1 cut(s)	227
BlpI	GCTNAGC	1 cut(s)	297
BmcAI	AGTACT	1 cut(s)	172
BmsI	GCATC	2 cut(s)	34, 334
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	85
Bpu1102I	GCTNAGC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	202
Bse3DI	GCAATG	2 cut(s)	131, 243
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	131, 243
BseMII	CTCAG	4 cut(s)	99, 181, 288, 300
BseRI	GAGGAG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	203, 323
BsmI	GAATGC	1 cut(s)	395
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	152, 178
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	81
BspCNI	CTCAG	4 cut(s)	98, 180, 289, 301
BspPI	GGATC	2 cut(s)	147, 173
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	131, 243
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	152, 178
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	85, 167, 297, 309, 325
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	155, 181
BstMAI	GTCTC	2 cut(s)	203, 323
BstMBI	GATC	2 cut(s)	152, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	152, 178
BstYI	RGATCY	2 cut(s)	152, 178
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	108
CseI	GACGC	2 cut(s)	78, 94
Csp6I	GTAC	3 cut(s)	37, 171, 313
CviAII	CATG	2 cut(s)	254, 293
CviJI	RGCY	6 cut(s)	75, 99, 273, 301, 308, 368
CviKI_1	RGCY	6 cut(s)	75, 99, 273, 301, 308, 368
CviQI	GTAC	3 cut(s)	37, 171, 313
DdeI	CTNAG	5 cut(s)	85, 167, 297, 309, 325
DpnI	GATC	2 cut(s)	154, 180
DpnII	GATC	2 cut(s)	152, 178
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	4 cut(s)	195, 354, 369, 390
EcoICRI	GAGCTC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	257, 296
FaiI	YATR	8 cut(s)	140, 144, 159, 250, 255, 278, 280, 294
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	2 cut(s)	253, 292
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	85
HgaI	GACGC	2 cut(s)	78, 94
Hin1II	CATG	2 cut(s)	257, 296
HinfI	GANTC	2 cut(s)	13, 207
HphI	GGTGA	3 cut(s)	16, 368, 374
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	142, 248, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	5 cut(s)	85, 167, 297, 309, 325
Hsp92II	CATG	2 cut(s)	257, 296
Kzo9I	GATC	2 cut(s)	152, 178
LmnI	GCTCC	2 cut(s)	80, 104
LpnPI	CCDG	3 cut(s)	109, 115, 195
LweI	GCATC	2 cut(s)	34, 334
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	154, 180
MboI	GATC	2 cut(s)	152, 178
MboII	GAAGA	6 cut(s)	64, 188, 279, 347, 362, 383
MflI	RGATCY	2 cut(s)	152, 178
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	4 cut(s)	125, 213, 231, 287
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	3, 88, 94
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	152, 178
NlaIII	CATG	2 cut(s)	257, 296
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	152, 178
RsaI	GTAC	3 cut(s)	38, 172, 314
RsaNI	GTAC	3 cut(s)	37, 171, 313
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	152, 178
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	6 cut(s)	77, 101, 303, 310, 326, 370
SfaNI	GCATC	2 cut(s)	34, 334
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	4 cut(s)	125, 213, 231, 287
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	16
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	125, 213, 231, 287
TatI	WGTACW	3 cut(s)	36, 170, 312
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	296
XspI	CTAG	1 cut(s)	227
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.