Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029825

Physical Location & Seq

Genomic Coordinates Forward (+)

516714 .. 517266

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGATGTTATTGCTCATGATGCAGTTGTGGTGGCAAGGTATTTTGGGGCAACTCTTGTAGTTCCTGACATTAGAGGTAGCAAACCAGGGGATGAAAGGAACTTTGAAGAGATTTATGATGTTGAGAAGTTTATTCTTAGCCTGGACGGTGTTGTTAGAGTAGCAAAAGAACGACCTGGTAAACTATCATCAAGGAATCTTGCTGCTGTGAAGGTCCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

6.56

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	7 - 67	1e-08	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0029825)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0084881
rosa_samantha	Rh2CG006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	3 cut(s)	85, 141, 175
ApeKI	GCWGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	87, 143, 177
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	3 cut(s)	87, 143, 177
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	87, 143, 177
BmsI	GCATC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	87, 143, 177
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	10, 97
BseXI	GCAGC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	86
Bst2UI	CCWGG	3 cut(s)	87, 143, 177
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	10, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	3 cut(s)	87, 143, 177
BstSCI	CCNGG	3 cut(s)	85, 141, 175
BstV1I	GCAGC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	10, 97
CciI	TCATGA	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	175
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	85, 141, 175
FaeI	CATG	1 cut(s)	20
FaiI	YATR	2 cut(s)	18, 117
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	17, 104
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188III	TCNNGA	2 cut(s)	17, 65
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	72, 78, 99, 128, 155, 162, 189
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	10
MabI	ACCWGGT	1 cut(s)	175
MboII	GAAGA	1 cut(s)	119
MnlI	CCTC	1 cut(s)	68
MspR9I	CCNGG	3 cut(s)	87, 143, 177
MvaI	CCWGG	3 cut(s)	87, 143, 177
MwoI	GCNNNNNNNGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	216
PagI	TCATGA	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	85, 141, 175
PspGI	CCWGG	3 cut(s)	85, 141, 175
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
SatI	GCNGC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	87, 143, 177
SetI	ASST	4 cut(s)	41, 79, 178, 216
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	85, 141, 175
TaaI	ACNGT	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.