Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0029825

Physical Location & Seq

Genomic Coordinates Forward (+)

513755 .. 514343

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG006100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTCCATGCCGATTGCTCATGATGCAGTTGTGGTGGCAAGGTATTTTGGGGCAACTCTTGTAGTTCCTGACATTAGAGGTAGCAAACCAGGGGATGAAAGGAACTTTGAAGAGATTTATGATGTTGAGAAGTTTATTCTTAGCCTGGACGGTGTTGTTAGAGTAGCAAAAGAACGACCTGGTAAACTATCATCAAGGAATCTTGCTGCTGTGAAGGTCCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

75

Amino Acids

8.24

Weight (kDa)

8.09

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	8 - 68	1.1e-08	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029825)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0084881
rosa_samantha	Rh2CG006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	3 cut(s)	88, 144, 178
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	90, 146, 180
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	90, 146, 180
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	3 cut(s)	90, 146, 180
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	89
BseBI	CCWGG	3 cut(s)	90, 146, 180
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	90, 146, 180
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	3 cut(s)	90, 146, 180
BstSCI	CCNGG	3 cut(s)	88, 144, 178
BstV1I	GCAGC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	217
CsiI	ACCWGGT	1 cut(s)	178
CviAII	CATG	2 cut(s)	7, 20
CviJI	RGCY	1 cut(s)	144
CviKI_1	RGCY	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	3 cut(s)	88, 144, 178
FaeI	CATG	2 cut(s)	10, 23
FaiI	YATR	3 cut(s)	8, 21, 120
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	6, 19
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	10, 23
HinfI	GANTC	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	20, 68
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	10, 23
LpnPI	CCDG	7 cut(s)	75, 81, 102, 131, 158, 165, 192
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	13
MabI	ACCWGGT	1 cut(s)	178
MboII	GAAGA	1 cut(s)	122
MnlI	CCTC	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	90, 146, 180
MvaI	CCWGG	3 cut(s)	90, 146, 180
MwoI	GCNNNNNNNGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	10, 23
NlaIV	GGNNCC	1 cut(s)	219
PagI	TCATGA	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	3 cut(s)	88, 144, 178
PspGI	CCWGG	3 cut(s)	88, 144, 178
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	3 cut(s)	90, 146, 180
SetI	ASST	4 cut(s)	44, 82, 181, 219
SexAI	ACCWGGT	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	88, 144, 178
TaaI	ACNGT	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.