RchiOBHm_Chr2g0088071

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024820
Physical Location & Seq
Reverse (-)
2720743 .. 2722796
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGAAGTATGTGTTCGTGCTTGTCATAGCAATCGCAGCCATCGCAGAAGGCGCAGAATACACTGTAGGAGACGACATGGGTTGGATGGTTCTTCCCACTCCGGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAATGATACTCTAGCATTTGACTTTCCAGTAGGAGAACAACACGTGGCTTTTGTGACAAACGAGGATTTCGACACGTGTACCACCACAAATCCGCTATGGGAATCACCGGTTCCAGATGAAGTTGCACTTGTTCACTCAGGCACATTTTATTTCATTGGCACCTTCGCCGGCCACTGCGCCAAAGGCCAAAAGGTTGTCATTAACTGGACCAACTCTCCAGTCATGACTCCTGCTCAGAGTCCAACCCCAAGTTCATCTGCTGCTGTTGAAGCTAACAGTAATGCAAAGCTGCCGCTCAAGCATCTTTCCGAAAGAGTTGACAAACACAACAACAAAAAGAGAGTGTCCTTGACAATGGGGGGTGCCATCGATCAAAGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

175

Amino Acids

19.23

Weight (kDa)

4.93

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 111 7e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024820)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0088071
rosa_samantha Rh2CG035800 Rh2CG036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 302, 506
AccBSI CCGCTC 1 cut(s) 439
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 2 cut(s) 236, 437
AcoI YGGCCR 1 cut(s) 313
AcvI CACGTG 2 cut(s) 187, 219
AfaI GTAC 1 cut(s) 223
AflIII ACRYGT 3 cut(s) 184, 216, 218
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 2 cut(s) 416, 433
AluI AGCT 2 cut(s) 416, 433
Alw26I GTCTC 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 2 cut(s) 313, 328
ApeKI GCWGC 3 cut(s) 35, 404, 433
AsiGI ACCGGT 1 cut(s) 250
AspLEI GCGC 2 cut(s) 53, 323
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BanI GGYRCC 2 cut(s) 302, 506
BbrPI CACGTG 2 cut(s) 187, 219
BbvI GCAGC 3 cut(s) 47, 391, 420
BccI CCATC 3 cut(s) 47, 79, 518
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 4 cut(s) 36, 405, 434, 437
BlsI GCNGC 4 cut(s) 37, 406, 435, 438
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 3 cut(s) 255, 304, 508
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 425
Bsa29I ATCGAT 1 cut(s) 513
BsaAI YACGTR 2 cut(s) 187, 219
BsaWI WCCGGW 2 cut(s) 100, 250
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bse118I RCCGGY 2 cut(s) 250, 311
Bse1I ACTGG 3 cut(s) 170, 353, 362
BseAI TCCGGA 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 513
BseGI GGATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 294, 392
BseNI ACTGG 3 cut(s) 170, 353, 362
BseXI GCAGC 3 cut(s) 47, 391, 420
BshFI GGCC 2 cut(s) 315, 330
BshNI GGYRCC 2 cut(s) 302, 506
BshTI ACCGGT 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 513
BsiSI CCGG 3 cut(s) 101, 251, 312
BsmAI GTCTC 1 cut(s) 63
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 2 cut(s) 315, 330
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 514
BspACI CCGC 2 cut(s) 236, 437
BspANI GGCC 2 cut(s) 315, 330
BspCNI CTCAG 2 cut(s) 293, 391
BspDI ATCGAT 1 cut(s) 513
BspEI TCCGGA 1 cut(s) 100
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 3 cut(s) 255, 304, 508
BspT107I GGYRCC 2 cut(s) 302, 506
BsrBI CCGCTC 1 cut(s) 439
BsrFI RCCGGY 2 cut(s) 250, 311
BsrI ACTGG 3 cut(s) 170, 353, 362
BssAI RCCGGY 2 cut(s) 250, 311
BssMI GATC 1 cut(s) 514
Bst4CI ACNGT 2 cut(s) 64, 422
BstBAI YACGTR 2 cut(s) 187, 219
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 280, 378
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 2 cut(s) 53, 323
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 6 cut(s) 35, 41, 50, 327, 413, 442
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 47, 391, 420
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 2 cut(s) 315, 330
BsuTUI ATCGAT 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 60, 316
Cac8I GCNNGC 1 cut(s) 313
CciI TCATGA 1 cut(s) 366
CfoI GCGC 2 cut(s) 53, 323
Cfr10I RCCGGY 2 cut(s) 250, 311
Cfr13I GGNCC 1 cut(s) 351
ClaI ATCGAT 1 cut(s) 513
Csp6I GTAC 1 cut(s) 222
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 3 cut(s) 76, 117, 367
CviJI RGCY 6 cut(s) 38, 191, 315, 330, 416, 433
CviKI_1 RGCY 6 cut(s) 38, 191, 315, 330, 416, 433
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 280, 378
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 351
Eco72I CACGTG 2 cut(s) 187, 219
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 3 cut(s) 79, 120, 370
FaiI YATR 7 cut(s) 9, 26, 77, 111, 118, 241, 368
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 255, 287
FatI CATG 3 cut(s) 75, 116, 366
Fnu4HI GCNGC 4 cut(s) 36, 405, 434, 437
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 4 cut(s) 36, 405, 434, 437
FspBI CTAG 1 cut(s) 155
GlaI GCGC 2 cut(s) 52, 322
GluI GCNGC 4 cut(s) 36, 405, 434, 437
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 2 cut(s) 315, 330
HapII CCGG 3 cut(s) 101, 251, 312
HhaI GCGC 2 cut(s) 53, 323
Hin1II CATG 3 cut(s) 79, 120, 370
Hin6I GCGC 2 cut(s) 51, 321
HinP1I GCGC 2 cut(s) 51, 321
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 3 cut(s) 245, 370, 382
HpaII CCGG 3 cut(s) 101, 251, 312
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 3 cut(s) 222, 277, 463
Hpy188I TCNGA 2 cut(s) 381, 454
Hpy188III TCNNGA 3 cut(s) 101, 257, 367
Hpy8I GTNNAC 3 cut(s) 222, 277, 463
HpyAV CCTTC 2 cut(s) 41, 316
HpyCH4III ACNGT 2 cut(s) 64, 422
HpyCH4IV ACGT 2 cut(s) 186, 218
HpyCH4V TGCA 2 cut(s) 269, 428
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 41, 50, 327, 413, 442
HpyF3I CTNAG 2 cut(s) 280, 378
HpySE526I ACGT 2 cut(s) 186, 218
Hsp92II CATG 3 cut(s) 79, 120, 370
HspAI GCGC 2 cut(s) 51, 321
Kpn2I TCCGGA 1 cut(s) 100
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 514
LpnPI CCDG 9 cut(s) 114, 183, 264, 267, 270, 325, 334, 375, 387
Lsp1109I GCAGC 3 cut(s) 47, 391, 420
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 155
MaeII ACGT 2 cut(s) 186, 218
MaeIII GTNAC 2 cut(s) 196, 521
MalI GATC 1 cut(s) 516
MbiI CCGCTC 1 cut(s) 439
MboI GATC 1 cut(s) 514
MboII GAAGA 1 cut(s) 83
MlyI GAGTC 2 cut(s) 364, 391
MmeI TCCRAC 2 cut(s) 62, 410
MnlI CCTC 1 cut(s) 199
MroI TCCGGA 1 cut(s) 100
MroNI GCCGGC 1 cut(s) 311
MseI TTAA 1 cut(s) 345
MspI CCGG 3 cut(s) 101, 251, 312
MwoI GCNNNNNNNGC 6 cut(s) 35, 41, 50, 327, 413, 442
NaeI GCCGGC 1 cut(s) 313
NdeII GATC 1 cut(s) 514
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 3 cut(s) 79, 120, 370
NlaIV GGNNCC 3 cut(s) 255, 304, 508
NmuCI GTSAC 1 cut(s) 196
PagI TCATGA 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 4 cut(s) 37, 406, 435, 438
PleI GAGTC 2 cut(s) 364, 390
PmaCI CACGTG 2 cut(s) 187, 219
PmlI CACGTG 2 cut(s) 187, 219
PpsI GAGTC 2 cut(s) 364, 390
Ppu21I YACGTR 2 cut(s) 187, 219
PspCI CACGTG 2 cut(s) 187, 219
PspN4I GGNNCC 3 cut(s) 255, 304, 508
PspPI GGNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 4 cut(s) 36, 405, 434, 437
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 2 cut(s) 364, 391
SetI ASST 6 cut(s) 189, 221, 308, 339, 418, 435
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SsiI CCGC 2 cut(s) 236, 437
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 64, 422
TaiI ACGT 2 cut(s) 189, 221
TaqI TCGA 2 cut(s) 213, 513
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 67, 323
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 35, 404, 433
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 5 cut(s) 17, 105, 276, 286, 387
TspRI CASTG 2 cut(s) 67, 323
VpaK11BI GGWCC 1 cut(s) 351
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.