Rh2CG036100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0024820
Physical Location & Seq
Reverse (-)
2812626 .. 2841721
29096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG036100.1

Sequence Viewer

Length: 534 bp
ATGAATATGAAGTATGTGTTCGTGCTTGTCATAGCAATCGCAGCCATCGCAGAAGGCGCAGAATACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCGGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAATGATACTCTAGCATTTGACTTTCCAGTAGGAGAACAACACGTGGCTTTTGTGACAAACGAGGATTTCGACACGTGTACCACCACAAATCCGCTATGGGAATCACCGGTTCCAGATGAAGTTGCACTTGTTCAATCAGGCACATTTTATTTCATTGGCACCTTCACCGGCCACTACGCCAAAGGCCAAAAGGTTGTCGTTAACTGGACCAACTCTCCAGTCATGACTCCTGCTCAGAGTCCAACCCCAAGTTCATCTGCTGCTGTCGAAGCTAACAGTAATGCAAAGTTGCCGCTTAAGCATCTTTCCAAAAGAGTTGACAAACACAACAACAAAAAGAGAGTGTCCTTGACAATGGGGGGTGCCATCGATCAAAGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

177

Amino Acids

19.53

Weight (kDa)

5.07

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 3.8e-10 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024820)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0088071
rosa_samantha Rh2CG035800 Rh2CG036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 308, 512
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 2 cut(s) 242, 443
AcoI YGGCCR 1 cut(s) 319
AcvI CACGTG 2 cut(s) 193, 225
AfaI GTAC 1 cut(s) 229
AflII CTTAAG 1 cut(s) 446
AflIII ACRYGT 3 cut(s) 190, 222, 224
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 2 cut(s) 319, 334
ApeKI GCWGC 2 cut(s) 41, 410
AsiGI ACCGGT 1 cut(s) 256
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 246, 307
AvaII GGWCC 1 cut(s) 357
BaeI ACNNNNGTAYC 2 cut(s) 211, 244
BanI GGYRCC 2 cut(s) 308, 512
BbrPI CACGTG 2 cut(s) 193, 225
BbvI GCAGC 2 cut(s) 53, 397
BccI CCATC 3 cut(s) 53, 85, 524
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 446
BisI GCNGC 3 cut(s) 42, 411, 443
BlsI GCNGC 3 cut(s) 43, 412, 444
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 4 cut(s) 96, 261, 310, 514
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 519
BsaAI YACGTR 2 cut(s) 193, 225
BsaWI WCCGGW 2 cut(s) 106, 256
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bse118I RCCGGY 2 cut(s) 256, 317
Bse1I ACTGG 3 cut(s) 176, 359, 368
BseAI TCCGGA 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 519
BseGI GGATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 3 cut(s) 176, 359, 368
BseXI GCAGC 2 cut(s) 53, 397
BshFI GGCC 2 cut(s) 321, 336
BshNI GGYRCC 2 cut(s) 308, 512
BshTI ACCGGT 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 519
BsiSI CCGG 3 cut(s) 107, 257, 318
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 2 cut(s) 321, 336
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 520
BspACI CCGC 2 cut(s) 242, 443
BspANI GGCC 2 cut(s) 321, 336
BspCNI CTCAG 1 cut(s) 397
BspDI ATCGAT 1 cut(s) 519
BspEI TCCGGA 1 cut(s) 106
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 96, 261, 310, 514
BspT107I GGYRCC 2 cut(s) 308, 512
BspTI CTTAAG 1 cut(s) 446
BsrFI RCCGGY 2 cut(s) 256, 317
BsrI ACTGG 3 cut(s) 176, 359, 368
BssAI RCCGGY 2 cut(s) 256, 317
BssMI GATC 1 cut(s) 520
Bst4CI ACNGT 2 cut(s) 70, 428
BstAFI CTTAAG 1 cut(s) 446
BstBAI YACGTR 2 cut(s) 193, 225
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 5 cut(s) 41, 47, 56, 419, 448
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 53, 397
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 2 cut(s) 321, 336
BsuTUI ATCGAT 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 66
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 2 cut(s) 256, 317
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 519
Csp6I GTAC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 3 cut(s) 82, 123, 373
CviJI RGCY 5 cut(s) 44, 197, 321, 336, 422
CviKI_1 RGCY 5 cut(s) 44, 197, 321, 336, 422
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 384
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 357
Eco72I CACGTG 2 cut(s) 193, 225
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 3 cut(s) 85, 126, 376
FaiI YATR 8 cut(s) 8, 15, 32, 83, 117, 124, 247, 374
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 261, 293
FatI CATG 3 cut(s) 81, 122, 372
Fnu4HI GCNGC 3 cut(s) 42, 411, 443
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 42, 411, 443
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 42, 411, 443
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 321, 336
HapII CCGG 3 cut(s) 107, 257, 318
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 85, 126, 376
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 2 cut(s) 352, 469
HindII GTYRAC 2 cut(s) 352, 469
HinfI GANTC 3 cut(s) 251, 376, 388
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 3 cut(s) 107, 257, 318
HphI GGTGA 2 cut(s) 246, 307
Hpy166II GTNNAC 3 cut(s) 228, 352, 469
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 107, 263, 373
Hpy8I GTNNAC 3 cut(s) 228, 352, 469
HpyAV CCTTC 2 cut(s) 47, 322
HpyCH4III ACNGT 2 cut(s) 70, 428
HpyCH4IV ACGT 2 cut(s) 192, 224
HpyCH4V TGCA 2 cut(s) 275, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 47, 56, 419, 448
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 2 cut(s) 192, 224
Hsp92II CATG 3 cut(s) 85, 126, 376
HspAI GCGC 1 cut(s) 57
Kpn2I TCCGGA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 520
LpnPI CCDG 9 cut(s) 120, 189, 270, 273, 276, 331, 340, 381, 393
Lsp1109I GCAGC 2 cut(s) 53, 397
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 192, 224
MaeIII GTNAC 2 cut(s) 202, 527
MalI GATC 1 cut(s) 522
MboI GATC 1 cut(s) 520
MlyI GAGTC 2 cut(s) 370, 397
MmeI TCCRAC 2 cut(s) 68, 416
MnlI CCTC 2 cut(s) 108, 205
MroI TCCGGA 1 cut(s) 106
MseI TTAA 2 cut(s) 351, 447
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 3 cut(s) 107, 257, 318
MwoI GCNNNNNNNGC 5 cut(s) 41, 47, 56, 419, 448
NdeII GATC 1 cut(s) 520
NlaIII CATG 3 cut(s) 85, 126, 376
NlaIV GGNNCC 4 cut(s) 96, 261, 310, 514
NmuCI GTSAC 1 cut(s) 202
PagI TCATGA 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 3 cut(s) 43, 412, 444
PleI GAGTC 2 cut(s) 370, 396
PmaCI CACGTG 2 cut(s) 193, 225
PmlI CACGTG 2 cut(s) 193, 225
PpsI GAGTC 2 cut(s) 370, 396
Ppu21I YACGTR 2 cut(s) 193, 225
PspCI CACGTG 2 cut(s) 193, 225
PspN4I GGNNCC 4 cut(s) 96, 261, 310, 514
PspPI GGNCC 1 cut(s) 357
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 351, 447
SatI GCNGC 3 cut(s) 42, 411, 443
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 2 cut(s) 370, 397
SetI ASST 5 cut(s) 195, 227, 314, 345, 424
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 2 cut(s) 242, 443
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 70, 428
TaiI ACGT 2 cut(s) 195, 227
TaqI TCGA 3 cut(s) 219, 417, 519
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 351, 447
Tru9I TTAA 2 cut(s) 351, 447
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 41, 410
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 6 cut(s) 17, 23, 111, 282, 292, 393
TspRI CASTG 1 cut(s) 73
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 357
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.