Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029802

Physical Location & Seq

Genomic Coordinates Reverse (-)

3817447 .. 3818183

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGTTCAACTACTACCCGAAACCTCTCCCATATCGTCCCACTCGACTTCAACTCCATCCACACATTTCCCGACTCCCACACTTGGGACTCCTCCACGGACCACCACCCCTTCACAGAACTCGTACCCATCATAGACCTACTCGACCCGAATGCCGCCTCGCTCATACAGCTTGCCTCTGAGCAATGGGGTGTGTTCCAAGTCACCAACCACGGCATTCCAATGAACTTAATCCAAGAAGCGGAGCTACAAGCCCGTGGATTGTTTGAGCTGCCTGGGGACCAAAAACTCCAGGCACTTGTAGACCAAAAACTCCAGGCACTTGTAGTCAATGTAGGTGATTTGATGCACATGCTACCCAACGGCCGGTTCAAGACTGCAGTGCATCGTGCGGTTGTCAATGAGCTATATCATCGCATCTCCATCGCCTCCTTCTACAGCCCACCATACGACGTGAAGATATCACCACCGATGAAGTTGATCGACCAAGATCATCCTCCCCTATATCAACCGGTAACTTGGAAGGAACACCTTGGTACCAAGGGAACACATTTCAACAGAGCACTTGATCTAATGAGGAATGACACCAAGCACCATACATGTATGAATAGAAAGCCTACTCAGCATACATTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

212

Amino Acids

24.17

Weight (kDa)

6.41

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	42 - 99	6.8e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	87 - 148	1.4e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029802)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089721
rosa_samantha	Rh2DG048200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	3 cut(s)	156, 242, 392
AcoI	YGGCCR	1 cut(s)	364
AfaI	GTAC	2 cut(s)	126, 538
AfiI	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 366
AflIII	ACRYGT	1 cut(s)	599
AgeI	ACCGGT	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	9, 52, 373, 556
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	3 cut(s)	274, 291, 315
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	4 cut(s)	172, 247, 271, 406
AluI	AGCT	4 cut(s)	172, 247, 271, 406
Alw21I	GWGCWC	1 cut(s)	565
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	511
Asp718I	GGTACC	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	100, 280
AsuHPI	GGTGA	3 cut(s)	196, 350, 456
AvaII	GGWCC	2 cut(s)	100, 280
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BanI	GGYRCC	1 cut(s)	536
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	3 cut(s)	65, 137, 431
BceAI	ACGGC	2 cut(s)	229, 379
BcgI	CGANNNNNNTGC	4 cut(s)	134, 168, 406, 440
BciT130I	CCWGG	3 cut(s)	276, 293, 317
BfmI	CTRYAG	2 cut(s)	378, 436
BisI	GCNGC	2 cut(s)	156, 272
BlsI	GCNGC	2 cut(s)	157, 273
Bme1390I	CCNGG	3 cut(s)	276, 293, 317
Bme18I	GGWCC	2 cut(s)	100, 280
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	100, 280
BmiI	GGNNCC	2 cut(s)	281, 538
BmrFI	CCNGG	3 cut(s)	276, 293, 317
BmsI	GCATC	3 cut(s)	336, 394, 426
BpmI	CTGGAG	2 cut(s)	275, 299
BsaJI	CCNNGG	6 cut(s)	96, 211, 256, 275, 532, 540
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 366
Bse118I	RCCGGY	2 cut(s)	366, 511
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	276, 293, 317
BseDI	CCNNGG	6 cut(s)	96, 211, 256, 275, 532, 540
BseGI	GGATG	2 cut(s)	57, 493
BseLI	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 366
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	171, 635
BseRI	GAGGAG	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	536
BshTI	ACCGGT	1 cut(s)	511
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	367, 512
BslFI	GGGAC	3 cut(s)	23, 101, 293
BslI	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 366
BsmFI	GGGAC	3 cut(s)	23, 101, 293
BsmI	GAATGC	2 cut(s)	157, 216
BsnI	GGCC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	480, 490, 568
BspACI	CCGC	3 cut(s)	156, 242, 392
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	172, 634
BspLI	GGNNCC	2 cut(s)	281, 538
BspMAI	CTGCAG	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	366, 511
BssAI	RCCGGY	2 cut(s)	366, 511
BssECI	CCNNGG	6 cut(s)	96, 211, 256, 275, 532, 540
BssMI	GATC	3 cut(s)	480, 490, 568
BssT1I	CCWWGG	2 cut(s)	532, 540
Bst2UI	CCWGG	3 cut(s)	276, 293, 317
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	180, 621
BstDSI	CCRYGG	3 cut(s)	96, 211, 256
BstF5I	GGATG	2 cut(s)	57, 493
BstKTI	GATC	3 cut(s)	483, 493, 571
BstMBI	GATC	3 cut(s)	480, 490, 568
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 622
BstNI	CCWGG	3 cut(s)	276, 293, 317
BstNSI	RCATGY	2 cut(s)	355, 603
BstSCI	CCNGG	3 cut(s)	274, 291, 315
BstSFI	CTRYAG	2 cut(s)	378, 436
BstV1I	GCAGC	1 cut(s)	258
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	366
BtgI	CCRYGG	3 cut(s)	96, 211, 256
BtgZI	GCGATG	2 cut(s)	398, 409
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	57, 493
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	174
Cfr10I	RCCGGY	2 cut(s)	366, 511
Cfr13I	GGNCC	2 cut(s)	100, 280
Csp6I	GTAC	2 cut(s)	125, 537
CspAI	ACCGGT	1 cut(s)	511
CviAII	CATG	2 cut(s)	352, 600
CviJI	RGCY	8 cut(s)	172, 247, 254, 271, 366, 406, 441, 616
CviKI_1	RGCY	8 cut(s)	172, 247, 254, 271, 366, 406, 441, 616
CviQI	GTAC	2 cut(s)	125, 537
DdeI	CTNAG	2 cut(s)	180, 621
DpnI	GATC	3 cut(s)	482, 492, 570
DpnII	GATC	3 cut(s)	480, 490, 568
EaeI	YGGCCR	1 cut(s)	364
EagI	CGGCCG	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	532, 540
Eco32I	GATATC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	100, 280
Eco52I	CGGCCG	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	274, 291, 315
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	2 cut(s)	532, 540
ErhI	CCWWGG	2 cut(s)	532, 540
FaeI	CATG	2 cut(s)	355, 603
FaqI	GGGAC	3 cut(s)	23, 101, 293
FatI	CATG	2 cut(s)	351, 599
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	156, 272
FokI	GGATG	2 cut(s)	44, 480
Fsp4HI	GCNGC	2 cut(s)	156, 272
GluI	GCNGC	2 cut(s)	156, 272
GsuI	CTGGAG	2 cut(s)	275, 299
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	367, 512
Hin1II	CATG	2 cut(s)	355, 603
HinfI	GANTC	2 cut(s)	74, 89
HpaII	CCGG	2 cut(s)	367, 512
HphI	GGTGA	3 cut(s)	196, 350, 456
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	71, 373
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	3 cut(s)	121, 442, 517
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	349, 380, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 622
HpyF3I	CTNAG	2 cut(s)	180, 621
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	355, 603
KpnI	GGTACC	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	480, 490, 568
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	261, 278, 288, 302, 305, 329, 380, 525
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	3 cut(s)	336, 394, 426
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	202, 514
MalI	GATC	3 cut(s)	482, 492, 570
MboI	GATC	3 cut(s)	480, 490, 568
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	565
MlyI	GAGTC	2 cut(s)	68, 83
MnlI	CCTC	7 cut(s)	35, 103, 169, 187, 439, 507, 570
MseI	TTAA	2 cut(s)	230, 637
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	2 cut(s)	367, 512
MspR9I	CCNGG	3 cut(s)	276, 293, 317
Mva1269I	GAATGC	2 cut(s)	157, 216
MvaI	CCWGG	3 cut(s)	276, 293, 317
MwoI	GCNNNNNNNGC	2 cut(s)	169, 622
NdeII	GATC	3 cut(s)	480, 490, 568
NlaIII	CATG	2 cut(s)	355, 603
NlaIV	GGNNCC	2 cut(s)	281, 538
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	2 cut(s)	355, 603
PciI	ACATGT	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	2 cut(s)	157, 216
PinAI	ACCGGT	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	157, 273
PleI	GAGTC	2 cut(s)	68, 83
PpsI	GAGTC	2 cut(s)	68, 83
PscI	ACATGT	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	274, 291, 315
PspGI	CCWGG	3 cut(s)	274, 291, 315
PspN4I	GGNNCC	2 cut(s)	281, 538
PspPI	GGNCC	2 cut(s)	100, 280
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	126, 538
RsaNI	GTAC	2 cut(s)	125, 537
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	230, 637
SatI	GCNGC	2 cut(s)	156, 272
Sau3AI	GATC	3 cut(s)	480, 490, 568
Sau96I	GGNCC	2 cut(s)	100, 280
SchI	GAGTC	2 cut(s)	68, 83
ScrFI	CCNGG	3 cut(s)	276, 293, 317
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	9 cut(s)	27, 141, 174, 249, 273, 340, 408, 456, 534
SfaNI	GCATC	3 cut(s)	336, 394, 426
SfcI	CTRYAG	2 cut(s)	378, 436
SinI	GGWCC	2 cut(s)	100, 280
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	3 cut(s)	156, 242, 392
StyD4I	CCNGG	3 cut(s)	274, 291, 315
StyI	CCWWGG	2 cut(s)	532, 540
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	45, 144, 483
TauI	GCSGC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	230, 637
Tru9I	TTAA	2 cut(s)	230, 637
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	239, 488, 620
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	100, 280
XceI	RCATGY	2 cut(s)	355, 603
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.