Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0029802

Physical Location & Seq

Genomic Coordinates Reverse (-)

3446599 .. 3447150

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG048200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGTTCAACCACTACCCGAAACCTCTCCCATATCGTCCCACTCGACTTCAACTCCATCCACACATTACCCGACTCCCACACTTGGGACTCCTCCACGGACCACCACCCCTTCACAGAACTCGTACCCATCATAGACCTACTTGACCCGAATGCTGCCTCGCTGATACAGCTTGCCTCTGAGCAATGGGGTGTGTTCCAAGTCACCAACCACGGCATTCCAATGAACTTAATCCAAGAAGCGGAGCTACAAGCCCGTGGATTGTTTGAGCTGCCTGGGGACCAAAAACTCCAGGCACCTGTAGTCAATGTAGGTGATTTGATGCACATACTATCCAACGGCCGGTTCAAGACTGCAGTGCATCATGCGGTTGTCAATGAGCTATATCACCGCATCTCCGTCGCCTCCTTCTACAGCCCACCGTACAACGTGAAGATATCACCACCGACGAAGTTGATCGACCAAGATCATCCTCCCCTATATCAACCGGTAACTTGGAAGGAATACCTCGGTACCAAGGGTGTTCACATTTCAACAGGGCACTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

183

Amino Acids

20.43

Weight (kDa)

5.95

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	42 - 102	3.6e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	98 - 140	1.2e-08	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029802)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089721
rosa_samantha	Rh2DG048200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	2 cut(s)	295, 512
AciI	CCGC	3 cut(s)	242, 368, 391
AcoI	YGGCCR	1 cut(s)	340
AfaI	GTAC	3 cut(s)	126, 425, 514
AfiI	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 342
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	9, 52, 349, 534
AjnI	CCWGG	2 cut(s)	274, 291
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	4 cut(s)	172, 247, 271, 382
AluI	AGCT	4 cut(s)	172, 247, 271, 382
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	155, 271
AsiGI	ACCGGT	1 cut(s)	487
Asp718I	GGTACC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	100, 280
AsuHPI	GGTGA	4 cut(s)	196, 326, 380, 432
AvaII	GGWCC	2 cut(s)	100, 280
BaeGI	GKGCMC	1 cut(s)	543
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BanI	GGYRCC	2 cut(s)	295, 512
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BbvI	GCAGC	2 cut(s)	142, 258
BccI	CCATC	2 cut(s)	65, 137
BceAI	ACGGC	2 cut(s)	229, 355
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	2 cut(s)	276, 293
BfmI	CTRYAG	3 cut(s)	300, 354, 412
BisI	GCNGC	2 cut(s)	156, 272
BlsI	GCNGC	2 cut(s)	157, 273
Bme1390I	CCNGG	2 cut(s)	276, 293
Bme18I	GGWCC	2 cut(s)	100, 280
BmgT120I	GGNCC	2 cut(s)	100, 280
BmiI	GGNNCC	3 cut(s)	281, 297, 514
BmrFI	CCNGG	2 cut(s)	276, 293
BmsI	GCATC	3 cut(s)	312, 370, 402
BpmI	CTGGAG	1 cut(s)	275
BsaJI	CCNNGG	6 cut(s)	96, 211, 256, 275, 508, 516
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 342
Bse118I	RCCGGY	2 cut(s)	342, 487
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	276, 293
BseDI	CCNNGG	6 cut(s)	96, 211, 256, 275, 508, 516
BseGI	GGATG	2 cut(s)	57, 469
BseLI	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 342
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	543
BseX3I	CGGCCG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	142, 258
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	2 cut(s)	295, 512
BshTI	ACCGGT	1 cut(s)	487
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	343, 488
BslFI	GGGAC	3 cut(s)	23, 101, 293
BslI	CCNNNNNNNGG	4 cut(s)	84, 85, 241, 342
BsmFI	GGGAC	3 cut(s)	23, 101, 293
BsmI	GAATGC	2 cut(s)	157, 216
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	456, 466, 546
BspACI	CCGC	3 cut(s)	242, 368, 391
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	281, 297, 514
BspMAI	CTGCAG	1 cut(s)	358
BspT107I	GGYRCC	2 cut(s)	295, 512
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	342, 487
BssAI	RCCGGY	2 cut(s)	342, 487
BssECI	CCNNGG	6 cut(s)	96, 211, 256, 275, 508, 516
BssMI	GATC	3 cut(s)	456, 466, 546
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	276, 293
Bst4CI	ACNGT	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	3 cut(s)	96, 211, 256
BstF5I	GGATG	2 cut(s)	57, 469
BstKTI	GATC	3 cut(s)	459, 469, 549
BstMBI	GATC	3 cut(s)	456, 466, 546
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	276, 293
BstSCI	CCNGG	2 cut(s)	274, 291
BstSFI	CTRYAG	3 cut(s)	300, 354, 412
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	142, 258
BstZI	CGGCCG	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	3 cut(s)	96, 211, 256
BtsCI	GGATG	2 cut(s)	57, 469
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	174
Cfr10I	RCCGGY	2 cut(s)	342, 487
Cfr13I	GGNCC	2 cut(s)	100, 280
Csp6I	GTAC	3 cut(s)	125, 424, 513
CspAI	ACCGGT	1 cut(s)	487
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	7 cut(s)	172, 247, 254, 271, 342, 382, 417
CviKI_1	RGCY	7 cut(s)	172, 247, 254, 271, 342, 382, 417
CviQI	GTAC	3 cut(s)	125, 424, 513
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	3 cut(s)	458, 468, 548
DpnII	GATC	3 cut(s)	456, 466, 546
EaeI	YGGCCR	1 cut(s)	340
EagI	CGGCCG	1 cut(s)	340
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	100, 280
Eco52I	CGGCCG	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	274, 291
EcoRV	GATATC	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	1 cut(s)	368
FaiI	YATR	6 cut(s)	33, 134, 329, 366, 385, 481
FaqI	GGGAC	3 cut(s)	23, 101, 293
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	156, 272
FokI	GGATG	2 cut(s)	44, 456
Fsp4HI	GCNGC	2 cut(s)	156, 272
GluI	GCNGC	2 cut(s)	156, 272
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	343, 488
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	2 cut(s)	74, 89
HpaII	CCGG	2 cut(s)	343, 488
HphI	GGTGA	4 cut(s)	196, 326, 380, 432
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	2 cut(s)	404, 451
HpyAV	CCTTC	3 cut(s)	121, 418, 493
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	3 cut(s)	325, 356, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	456, 466, 546
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	261, 278, 288, 305, 312, 356, 501, 522
Lsp1109I	GCAGC	2 cut(s)	142, 258
LweI	GCATC	3 cut(s)	312, 370, 402
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	202, 490
MalI	GATC	3 cut(s)	458, 468, 548
MboI	GATC	3 cut(s)	456, 466, 546
MboII	GAAGA	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	543
MlyI	GAGTC	2 cut(s)	68, 83
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	35, 103, 169, 187, 415, 483, 518
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	2 cut(s)	343, 488
MspR9I	CCNGG	2 cut(s)	276, 293
Mva1269I	GAATGC	2 cut(s)	157, 216
MvaI	CCWGG	2 cut(s)	276, 293
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	456, 466, 546
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	3 cut(s)	281, 297, 514
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	2 cut(s)	157, 216
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	157, 273
PleI	GAGTC	2 cut(s)	68, 83
PpsI	GAGTC	2 cut(s)	68, 83
Psp6I	CCWGG	2 cut(s)	274, 291
PspGI	CCWGG	2 cut(s)	274, 291
PspN4I	GGNNCC	3 cut(s)	281, 297, 514
PspPI	GGNCC	2 cut(s)	100, 280
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	126, 425, 514
RsaNI	GTAC	3 cut(s)	125, 424, 513
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	156, 272
Sau3AI	GATC	3 cut(s)	456, 466, 546
Sau96I	GGNCC	2 cut(s)	100, 280
SchI	GAGTC	2 cut(s)	68, 83
ScrFI	CCNGG	2 cut(s)	276, 293
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	3 cut(s)	312, 370, 402
SfcI	CTRYAG	3 cut(s)	300, 354, 412
SinI	GGWCC	2 cut(s)	100, 280
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	3 cut(s)	242, 368, 391
StyD4I	CCNGG	2 cut(s)	274, 291
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	45, 459
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	155, 271
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	2 cut(s)	113, 388
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	2 cut(s)	100, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.