Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029782

Physical Location & Seq

Genomic Coordinates Forward (+)

20367119 .. 20368501

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCGAATAGAAGCATGCCAGCCAATCCACAGCCTACTTCCGGAGCTCTTCTAATCGGTGATGCTTTCAATATGCGTCATGCTTGCACTGGTGGAGGAATGACTGTGGCACGCTCCCTGTACAACACCGACTCTCCTGATCAAGCAAGGAAGGAGATGCGCCAAGCATGTTTTGACTATCTATGCCTTGGAGGTGTCTTTTCAACCGGACCAGTGGCTTTGCTCTCTGGTCTAAATCCTCGCCCGCTGAGTTTACTCTTCCATTTTTTTTTCTGTAGCGATATATGGTGTTGGCAGTTTGCTCCTACCATTTCCTTCACCGAAACGCATGTGGGTTGGAGCAAAATTATTTTGGCGCATCCGGCTAATATTTCTCGAAATTTTCTTAGGTATCCGGGTGTTTGCCATACATCTATTTTGTTAAATATTTTGAACCATTGGATTAGTAATATATCTAATGGTCCAAGATATTTAAAATTTGGTATTCTGTTTTTTTTTTTTTTAAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0004506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0012505 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

170

Amino Acids

19.1

Weight (kDa)

9.41

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SE	PF08491	1 - 37	2.3e-12	Squalene epoxidase
SE	PF08491	40 - 91	8.6e-14	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108901
rosa_roxburghii	Rroxscaffold_2G00134710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	379, 476
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	70, 204, 433
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	379, 476
AspLEI	GCGC	2 cut(s)	162, 358
AspS9I	GGNCC	2 cut(s)	209, 461
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	71, 310
AvaII	GGWCC	2 cut(s)	209, 461
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	402
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	402
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	2 cut(s)	209, 461
BmgT120I	GGNCC	2 cut(s)	209, 461
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	52, 147, 367
BpuMI	CCSGG	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	2 cut(s)	41, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	94, 212
BseAI	TCCGGA	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	94, 212
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	4 cut(s)	42, 207, 362, 395
BslI	CCNNNNNNNGG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp13I	TCCGGA	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	94, 212
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	54, 263
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	5 cut(s)	17, 21, 85, 112, 245
BstDEI	CTNAG	2 cut(s)	248, 386
BstF5I	GGATG	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	162, 358
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNSI	RCATGY	3 cut(s)	19, 171, 332
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	87, 219
Cac8I	GCNNGC	5 cut(s)	17, 21, 85, 112, 245
CfoI	GCGC	2 cut(s)	162, 358
Cfr13I	GGNCC	2 cut(s)	209, 461
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	4 cut(s)	16, 80, 168, 329
CviJI	RGCY	5 cut(s)	23, 34, 47, 218, 365
CviKI_1	RGCY	5 cut(s)	23, 34, 47, 218, 365
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	248, 386
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	54, 263
EarI	CTCTTC	2 cut(s)	54, 263
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	209, 461
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	4 cut(s)	19, 83, 171, 332
FatI	CATG	4 cut(s)	15, 79, 167, 328
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	49
GlaI	GCGC	2 cut(s)	161, 357
HapII	CCGG	4 cut(s)	42, 207, 362, 395
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	162, 358
Hin1II	CATG	4 cut(s)	19, 83, 171, 332
Hin6I	GCGC	2 cut(s)	160, 356
HinP1I	GCGC	2 cut(s)	160, 356
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	4 cut(s)	42, 207, 362, 395
HphI	GGTGA	2 cut(s)	71, 310
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	42, 137, 375
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	145, 325
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	248, 386
Hsp92II	CATG	4 cut(s)	19, 83, 171, 332
HspAI	GCGC	2 cut(s)	160, 356
Kpn2I	TCCGGA	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	4 cut(s)	44, 119, 307, 339
LweI	GCATC	3 cut(s)	52, 147, 367
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	41, 250
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	345, 379, 476
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	89, 185, 249
MroI	TCCGGA	1 cut(s)	41
MseI	TTAA	3 cut(s)	422, 473, 503
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	4 cut(s)	42, 207, 362, 395
MspR9I	CCNGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	19, 83, 171, 332
NspI	RCATGY	3 cut(s)	19, 171, 332
PaeI	GCATGC	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	209, 461
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	422, 473, 503
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	209, 461
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	3 cut(s)	49, 196, 392
SfaNI	GCATC	3 cut(s)	52, 147, 367
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	2 cut(s)	209, 461
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	3 cut(s)	345, 379, 476
SsiI	CCGC	1 cut(s)	245
SspI	AATATT	2 cut(s)	370, 427
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	376
TasI	AATT	3 cut(s)	345, 379, 476
TatI	WGTACW	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	422, 473, 503
Tru9I	TTAA	3 cut(s)	422, 473, 503
TscAI	CASTG	2 cut(s)	94, 219
TspRI	CASTG	2 cut(s)	94, 219
VpaK11BI	GGWCC	2 cut(s)	209, 461
XapI	RAATTY	2 cut(s)	379, 476
XceI	RCATGY	3 cut(s)	19, 171, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.