Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0029782

Physical Location & Seq

Genomic Coordinates Reverse (-)

72232223 .. 72247132

Gene Structure 14910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGTCGAGGCATAGCCAACAGCATTGCTTCCGCTTGAAAGAATTAATAGGTGTGTTGAGAAGGTCTACTGCCAAATTTTGGTGGCCATCGGAGATGGTGGCGGTGGCTGCGGTAGCGGCGGCTAGGCGTGTGGGACACGCTGTTGATTTATGTAACTTTTACCGAATTTCCGGGTACAGTTGGGAATCGTACTCGTTCTTGAAGAAGGAGTTCAAGGAAGAAGCTAGAGCACAAGAGGACCCACCACATCATCTCCATGACAAACCAATTGCTTGTACAATAAATACCTTGGCAGAAGCCCTGTACATGGTGTTCTCAGACTCTCCTGATCAAGCAAGGAAGGAGATGCGCCAAGCATGTTTTGACTATCTATGCATTGGAGGTGTCTTTTCAACCGGACCAGCTGTGGCTTTGCTCTCTGGTCTAAATCCTCGCCCGCTGAGTTTACTCTTCCACTTTTTTTTCTGTAGCGATATATGGTGTTGGCAGTTTGCTCCTACCATTTCCCTTCACCGAAACGCATGTGGGTTGGAGCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0004506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0012505 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

181

Amino Acids

20.69

Weight (kDa)

7.63

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SE	PF08491	83 - 156	2.2e-20	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108901
rosa_roxburghii	Rroxscaffold_2G00134710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	6 cut(s)	34, 104, 113, 119, 122, 440
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	77, 168
AfaI	GTAC	4 cut(s)	179, 194, 280, 308
AfiI	CCNNNNNNNGG	2 cut(s)	81, 310
AgsI	TTSAA	4 cut(s)	40, 205, 217, 396
AluBI	AGCT	2 cut(s)	227, 407
AluI	AGCT	2 cut(s)	227, 407
Alw21I	GWGCWC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	77, 168
AseI	ATTAAT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	241, 401
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	241, 401
BalI	TGGCCA	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	91, 97
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	175
BfaI	CTAG	2 cut(s)	126, 228
BfmI	CTRYAG	1 cut(s)	469
BisI	GCNGC	3 cut(s)	111, 120, 123
BlsI	GCNGC	3 cut(s)	112, 121, 124
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	241, 401
BmgT120I	GGNCC	2 cut(s)	241, 401
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 310
Bse3DI	GCAATG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	81, 310
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	333, 434
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	174, 399
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	81, 310
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1407I	TGTACA	2 cut(s)	278, 306
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	6 cut(s)	34, 104, 113, 119, 122, 440
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	2 cut(s)	332, 435
BspLI	GGNNCC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	25
BsrGI	TGTACA	2 cut(s)	278, 306
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	458
BstAUI	TGTACA	2 cut(s)	278, 306
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	319, 443
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 116, 119
BstNSI	RCATGY	2 cut(s)	363, 528
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	241, 401
Csp6I	GTAC	4 cut(s)	178, 193, 279, 307
CviAII	CATG	4 cut(s)	260, 310, 360, 525
CviJI	RGCY	8 cut(s)	18, 88, 110, 125, 227, 302, 407, 413
CviKI_1	RGCY	8 cut(s)	18, 88, 110, 125, 227, 302, 407, 413
CviQI	GTAC	4 cut(s)	178, 193, 279, 307
DdeI	CTNAG	2 cut(s)	319, 443
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	241, 401
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	263, 313, 363, 528
FaiI	YATR	9 cut(s)	15, 154, 261, 311, 361, 376, 479, 481, 526
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	4 cut(s)	259, 309, 359, 524
FauI	CCCGC	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	111, 120, 123
Fsp4HI	GCNGC	3 cut(s)	111, 120, 123
FspBI	CTAG	2 cut(s)	126, 228
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	3 cut(s)	111, 120, 123
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	2 cut(s)	174, 399
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	4 cut(s)	263, 313, 363, 528
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	3 cut(s)	5, 188, 323
HpaII	CCGG	2 cut(s)	174, 399
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	69, 449
Hpy188I	TCNGA	2 cut(s)	94, 322
Hpy188III	TCNNGA	2 cut(s)	202, 329
Hpy8I	GTNNAC	2 cut(s)	69, 449
HpyAV	CCTTC	4 cut(s)	57, 202, 337, 521
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 116, 119
HpyF3I	CTNAG	2 cut(s)	319, 443
Hsp92II	CATG	4 cut(s)	263, 313, 363, 528
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	502, 535
LpnPI	CCDG	6 cut(s)	187, 317, 342, 408, 412, 417
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	2 cut(s)	126, 228
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	217, 233, 445
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	5 cut(s)	44, 77, 168, 270, 541
MluNI	TGGCCA	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	14, 317
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	4 cut(s)	3, 232, 377, 444
Mox20I	TGGCCA	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	380
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	88
MseI	TTAA	2 cut(s)	47, 544
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	88
MspA1I	CMGCKG	2 cut(s)	407, 442
MspI	CCGG	2 cut(s)	174, 399
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	110, 116, 119
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	263, 313, 363, 528
NlaIV	GGNNCC	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	2 cut(s)	363, 528
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	112, 121, 124
PleI	GAGTC	2 cut(s)	13, 317
PpsI	GAGTC	2 cut(s)	13, 317
PpuMI	RGGWCCY	1 cut(s)	241
PshBI	ATTAAT	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	241, 401
PspPPI	RGGWCCY	1 cut(s)	241
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	4 cut(s)	179, 194, 280, 308
RsaNI	GTAC	4 cut(s)	178, 193, 279, 307
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	47, 544
SatI	GCNGC	3 cut(s)	111, 120, 123
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	241, 401
SchI	GAGTC	2 cut(s)	14, 317
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	6 cut(s)	55, 68, 229, 293, 388, 409
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	241, 401
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	5 cut(s)	44, 77, 168, 270, 541
SsiI	CCGC	6 cut(s)	34, 104, 113, 119, 122, 440
SspMI	CTAG	2 cut(s)	126, 228
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	44, 77, 168, 270, 541
TatI	WGTACW	2 cut(s)	278, 306
TauI	GCSGC	2 cut(s)	122, 125
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	47, 544
Tru9I	TTAA	2 cut(s)	47, 544
TseI	GCWGC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	241, 401
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	2 cut(s)	77, 168
XceI	RCATGY	2 cut(s)	363, 528
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	126, 228
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.