Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021358

Physical Location & Seq

Genomic Coordinates Reverse (-)

22335506 .. 22339100

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGATGCTGTAATAAGAGTATTCAAACGTGTCGCTGGATTATCTGAGAGTGCAGGCGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCACTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTCTGGAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

84

Amino Acids

8.61

Weight (kDa)

7.72

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	34 - 70	1.5e-06	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021358)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110771 RchiOBHm_Chr3g0485581
rosa_rugosa	Rorug02G0158400.1 Rorug02G0630700
rosa_samantha	Rh4AG041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	25
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	77, 185, 243
AseI	ATTAAT	2 cut(s)	132, 158
AspS9I	GGNCC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
BbvI	GCAGC	3 cut(s)	64, 172, 230
BccI	CCATC	1 cut(s)	107
BisI	GCNGC	3 cut(s)	78, 186, 244
BlsI	GCNGC	3 cut(s)	79, 187, 245
BmgT120I	GGNCC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	2 cut(s)	102, 228
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	10, 99, 116
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	64, 172, 230
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	10, 99, 116
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 86
BstV1I	GCAGC	3 cut(s)	64, 172, 230
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	10, 99, 116
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	180
CviJI	RGCY	2 cut(s)	214, 243
CviKI_1	RGCY	2 cut(s)	214, 243
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaiI	YATR	2 cut(s)	170, 253
Fnu4HI	GCNGC	3 cut(s)	78, 186, 244
FokI	GGATG	3 cut(s)	17, 86, 103
Fsp4HI	GCNGC	3 cut(s)	78, 186, 244
GluI	GCNGC	3 cut(s)	78, 186, 244
GsuI	CTGGAG	2 cut(s)	102, 228
HaeIII	GGCC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	53, 89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 86
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	152
LpnPI	CCDG	6 cut(s)	21, 39, 57, 66, 158, 192
Lsp1109I	GCAGC	3 cut(s)	64, 172, 230
LweI	GCATC	1 cut(s)	125
MaeII	ACGT	1 cut(s)	28
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MluCI	AATT	2 cut(s)	133, 138
MnlI	CCTC	2 cut(s)	52, 203
MseI	TTAA	3 cut(s)	132, 137, 158
MspA1I	CMGCKG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	59, 86
NdeII	GATC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	79, 187, 245
PshBI	ATTAAT	2 cut(s)	132, 158
PspPI	GGNCC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	132, 137, 158
SatI	GCNGC	3 cut(s)	78, 186, 244
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	212
SetI	ASST	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	133, 138
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	31
TasI	AATT	2 cut(s)	133, 138
Tru1I	TTAA	3 cut(s)	132, 137, 158
Tru9I	TTAA	3 cut(s)	132, 137, 158
TseI	GCWGC	3 cut(s)	77, 185, 243
TspGWI	ACGGA	1 cut(s)	92
VspI	ATTAAT	2 cut(s)	132, 158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.