Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0021358

Physical Location & Seq

Genomic Coordinates Forward (+)

8620557 .. 8622205

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGATGGACCTGGGTTTCTTGGTATATAAATATGCAGTGCGCTTTGGGTTGTCTTCAAAGAGCTTTTGTGACCTTATCACTGGTGCTGATCTCCGGAAGGGAACAGCCAGAGGCTCCTCTTTCCCCTGCAATGGATGCTGTAATAAGAGTATTCAAATGTGTCACTGGATTATCTGAGAGTGCAGGTGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCTTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATAGAGGAGAGTACCGCTGCTTCTGTGCGAGTGTTGTATGGAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

128

Amino Acids

13.66

Weight (kDa)

5.32

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021358)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110771 RchiOBHm_Chr3g0485581
rosa_rugosa	Rorug02G0158400.1 Rorug02G0630700
rosa_samantha	Rh4AG041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	292
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	133, 241
AgsI	TTSAA	2 cut(s)	59, 157
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	209, 317, 375
AseI	ATTAAT	2 cut(s)	264, 290
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	9, 344
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	196, 304, 362
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	210, 318, 376
BlsI	GCNGC	3 cut(s)	211, 319, 377
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	9, 344
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	127, 257
BpiI	GAAGAC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	12, 347
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 241
Bse1I	ACTGG	2 cut(s)	87, 172
Bse3DI	GCAATG	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	12, 347
BseGI	GGATG	3 cut(s)	142, 231, 248
BseLI	CCNNNNNNNGG	2 cut(s)	133, 241
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	87, 172
BseRI	GAGGAG	2 cut(s)	108, 320
BseXI	GCAGC	3 cut(s)	196, 304, 362
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	133, 241
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	90, 284
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	87, 172
BssECI	CCNNGG	2 cut(s)	12, 347
BssMI	GATC	2 cut(s)	90, 284
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	142, 231, 248
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	93, 287
BstMBI	GATC	2 cut(s)	90, 284
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 191, 218
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	196, 304, 362
BstV2I	GAAGAC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	142, 231, 248
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	3 cut(s)	44, 80, 165
BveI	ACCTGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	9, 344
Csp6I	GTAC	1 cut(s)	312
CviJI	RGCY	5 cut(s)	65, 109, 116, 346, 375
CviKI_1	RGCY	5 cut(s)	65, 109, 116, 346, 375
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	92, 286
DpnII	GATC	2 cut(s)	90, 284
Eco130I	CCWWGG	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaiI	YATR	6 cut(s)	27, 29, 35, 302, 339, 385
Fnu4HI	GCNGC	3 cut(s)	210, 318, 376
FokI	GGATG	3 cut(s)	149, 218, 235
Fsp4HI	GCNGC	3 cut(s)	210, 318, 376
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	210, 318, 376
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	37, 131, 185, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 191, 218
HpyF3I	CTNAG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	42
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	90, 284
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	25, 68, 109, 123, 141, 153, 171, 189, 198
Lsp1109I	GCAGC	3 cut(s)	196, 304, 362
LweI	GCATC	2 cut(s)	127, 257
MaeIII	GTNAC	2 cut(s)	70, 163
MalI	GATC	2 cut(s)	92, 286
MboI	GATC	2 cut(s)	90, 284
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	2 cut(s)	265, 270
MnlI	CCTC	5 cut(s)	106, 129, 184, 298, 335
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	3 cut(s)	264, 269, 290
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	137, 191, 218
NdeII	GATC	2 cut(s)	90, 284
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	2 cut(s)	70, 163
PaqCI	CACCTGC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	211, 319, 377
PshBI	ATTAAT	2 cut(s)	264, 290
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	9, 344
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	264, 269, 290
SatI	GCNGC	3 cut(s)	210, 318, 376
Sau3AI	GATC	2 cut(s)	90, 284
Sau96I	GGNCC	2 cut(s)	9, 344
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	4 cut(s)	14, 67, 77, 190
SfaNI	GCATC	2 cut(s)	127, 257
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	9
Sse9I	AATT	2 cut(s)	265, 270
SsiI	CCGC	1 cut(s)	315
SspI	AATATT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	347
TasI	AATT	2 cut(s)	265, 270
Tru1I	TTAA	3 cut(s)	264, 269, 290
Tru9I	TTAA	3 cut(s)	264, 269, 290
TscAI	CASTG	3 cut(s)	44, 87, 172
TseFI	GTSAC	2 cut(s)	70, 163
TseI	GCWGC	3 cut(s)	209, 317, 375
Tsp45I	GTSAC	2 cut(s)	70, 163
TspRI	CASTG	3 cut(s)	44, 87, 172
VpaK11BI	GGWCC	1 cut(s)	9
VspI	ATTAAT	2 cut(s)	264, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.