RchiOBHm_Chr2g0120511

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029861
Physical Location & Seq
Reverse (-)
33171620 .. 33172315
696 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGCAGTGTTTTTATAGACTTCCTGTTCTATGTTGTGGAATTTCAGAGTATCTTGATGAAGCAACGTTGATTCCAAAAAATACCTCAGTTTTAATTCGTCGTGTACCTGGACGCCCTCGCATGCCCATTGTTACTAATTCAGACCTGAGCCAGACTGGGATGATCTTAGGGGTGATCAAGGTTCTAAATCTCTGCGATATTTCTGATATATCCCCCGATATCTCCTTTTTTCGACGGACCGATATATCTAGGGGGGTAAATATCTTATCTGTCACCGTTTCTGCGAAATTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

98

Amino Acids

10.9

Weight (kDa)

8.86

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0120511 RchiOBHm_Chr5g0053801

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 65
AcsI RAATTY 2 cut(s) 39, 287
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 1 cut(s) 105
AjnI CCWGG 1 cut(s) 106
ApoI RAATTY 2 cut(s) 39, 287
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 184, 265
AvaII GGWCC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 108
BclI TGATCA 1 cut(s) 174
BfaI CTAG 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 99, 137
BseNI ACTGG 1 cut(s) 160
Bsp143I GATC 2 cut(s) 162, 174
BspCNI CTCAG 2 cut(s) 98, 138
BsrI ACTGG 1 cut(s) 160
BssMI GATC 2 cut(s) 162, 174
BssNI GRCGYC 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 277
BstACI GRCGYC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 85, 146, 166
BstF5I GGATG 1 cut(s) 165
BstKTI GATC 2 cut(s) 165, 177
BstMBI GATC 2 cut(s) 162, 174
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 237
CpoI CGGWCCG 1 cut(s) 237
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 104
CspI CGGWCCG 1 cut(s) 237
CviAII CATG 1 cut(s) 121
CviJI RGCY 1 cut(s) 150
CviKI_1 RGCY 1 cut(s) 150
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 3 cut(s) 85, 146, 166
DpnI GATC 2 cut(s) 164, 176
DpnII GATC 2 cut(s) 162, 174
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 106
EcoRV GATATC 1 cut(s) 220
FaeI CATG 1 cut(s) 124
FaiI YATR 5 cut(s) 15, 31, 122, 209, 245
FatI CATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 174
FokI GGATG 1 cut(s) 172
FspBI CTAG 1 cut(s) 249
HgaI GACGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 1 cut(s) 124
HinfI GANTC 1 cut(s) 70
HphI GGTGA 2 cut(s) 184, 265
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 46, 142, 205, 296
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 2 cut(s) 102, 237
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 3 cut(s) 85, 146, 166
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 2 cut(s) 162, 174
LpnPI CCDG 6 cut(s) 36, 93, 120, 141, 158, 164
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 130, 271
MalI GATC 2 cut(s) 164, 176
MboI GATC 2 cut(s) 162, 174
MluCI AATT 4 cut(s) 39, 93, 136, 287
MnlI CCTC 2 cut(s) 94, 126
MseI TTAA 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
NdeII GATC 2 cut(s) 162, 174
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 70
Psp1406I AACGTT 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 1 cut(s) 237
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
Rsr2I CGGWCCG 1 cut(s) 237
RsrII CGGWCCG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 2 cut(s) 162, 174
Sau96I GGNCC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 108
SetI ASST 5 cut(s) 68, 86, 109, 147, 183
SinI GGWCC 1 cut(s) 237
SphI GCATGC 1 cut(s) 124
Sse9I AATT 4 cut(s) 39, 93, 136, 287
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 232
TaqII GACCGA 1 cut(s) 254
TasI AATT 4 cut(s) 39, 93, 136, 287
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 2 cut(s) 39, 287
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.