RchiOBHm_Chr5g0053801

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
56152506 .. 56152711
206 bp
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UTR
Exon/CDS
Intron
PRQ33105

Sequence Viewer

Length: 159 bp
ATGGGTTTGACCAAGGTTCTAAATCTCTGCGATATTTCCGATATATCCCCCGATATCTCCTTTTTTCGACGGACCGATATATCTAGGGGGGTACATATCTTATCTGTCACCGTTTCTGCGAAATTTCTCCGACATTGTCAAATATCCCCGATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.86

Weight (kDa)

8.84

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0120511 RchiOBHm_Chr5g0053801

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 72
BfaI CTAG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 72
CpoI CGGWCCG 1 cut(s) 72
Csp6I GTAC 1 cut(s) 92
CspI CGGWCCG 1 cut(s) 72
CviQI GTAC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 12
Eco32I GATATC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 72
EcoRV GATATC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaiI YATR 4 cut(s) 44, 80, 96, 154
FspBI CTAG 1 cut(s) 84
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 40, 131
Hpy99I CGWCG 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 112
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 106
MluCI AATT 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 135
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
Rsr2I CGGWCCG 1 cut(s) 72
RsrII CGGWCCG 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 72
SetI ASST 1 cut(s) 18
SgeI CNNG 3 cut(s) 25, 62, 96
SinI GGWCC 1 cut(s) 72
Sse9I AATT 1 cut(s) 122
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 67
TaqII GACCGA 1 cut(s) 89
TasI AATT 1 cut(s) 122
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 122
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.