RchiOBHm_Chr2g0124751

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029704
Physical Location & Seq
Reverse (-)
38160859 .. 38161738
880 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGAATCCAATCATCCTCTTTTGCTCTCTTCCGGTCACCCTCTCCCACGCCACCATAGCCTACCATTCCATTCTGCGCACCACATTCGTCGACTTCTCCGCTGGTGCCACCGACGCCTCCCTGATGCCCCCATCACGGCTGCCCCAATTTTCGATGACGGGTCGTTGGAAATCTTCAAAACAACAGGTTCCTCGATCGGTATTGCCAGATCTCGGGTCTGATAAGGTTGTGGATATGGTTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

82

Amino Acids

9.01

Weight (kDa)

9.03

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029704)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124751 RchiOBHm_Chr2g0158181

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 135, 212
AgsI TTSAA 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 212
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BglII AGATCT 1 cut(s) 208
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 106, 189
BmsI GCATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 212
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 135, 212
BseXI GCAGC 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 135, 212
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 2 cut(s) 194, 208
BspACI CCGC 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 106, 189
BspT107I GGYRCC 1 cut(s) 104
BssMI GATC 2 cut(s) 194, 208
BssNI GRCGYC 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 2 cut(s) 197, 211
BstMBI GATC 2 cut(s) 194, 208
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 56, 113
BstPI GGTNACC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsCI GGATG 1 cut(s) 12
CfoI GCGC 1 cut(s) 78
CseI GACGC 1 cut(s) 122
CviJI RGCY 2 cut(s) 59, 139
CviKI_1 RGCY 2 cut(s) 59, 139
DpnI GATC 2 cut(s) 196, 210
DpnII GATC 2 cut(s) 194, 208
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 34
FaiI YATR 2 cut(s) 56, 236
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 140
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 92, 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 113
Hsp92I GRCGYC 1 cut(s) 114
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 194, 208
LpnPI CCDG 5 cut(s) 45, 87, 134, 170, 219
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 196, 210
MboI GATC 2 cut(s) 194, 208
MboII GAAGA 2 cut(s) 20, 165
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 4 cut(s) 26, 50, 127, 201
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 56, 113
NdeII GATC 2 cut(s) 194, 208
NlaIV GGNNCC 2 cut(s) 106, 189
NmuCI GTSAC 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 77
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 141
Ple19I CGATCG 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 106, 189
PsuI RGATCY 1 cut(s) 208
PvuI CGATCG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 194, 208
SetI ASST 2 cut(s) 189, 228
SfaNI GCATC 1 cut(s) 114
Sse9I AATT 1 cut(s) 146
SsiI CCGC 1 cut(s) 99
TaqI TCGA 3 cut(s) 90, 152, 193
TasI AATT 1 cut(s) 146
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.