RchiOBHm_Chr2g0158181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029704
Physical Location & Seq
Reverse (-)
74552781 .. 74553379
599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52689

Sequence Viewer

Length: 174 bp
ATGACCGTCGACTTCTCCGCCGGGGCCACCGAAGCCGCCTTGATGCCCTCCTCACGGAGGCCCCAATTTTCGACGAGTCATTGGAAATCTTCAAAACAACATGTTCCTCGATCGGTAGTACCAGATTTCGGGTTCGATCATAAATCCAAGGTTGTGGATATGGTTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.35

Weight (kDa)

9.4

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029704)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124751 RchiOBHm_Chr2g0158181

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AciI CCGC 2 cut(s) 18, 36
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 3 cut(s) 54, 57, 128
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 93
AoxI GGCC 2 cut(s) 24, 59
AspS9I GGNCC 2 cut(s) 24, 60
AsuC2I CCSGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 22
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 24, 60
BmiI GGNNCC 2 cut(s) 25, 62
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 21, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 57, 128
BseDI CCNNGG 2 cut(s) 21, 147
BseLI CCNNNNNNNGG 3 cut(s) 54, 57, 128
BseRI GAGGAG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 26, 61
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 3 cut(s) 54, 57, 128
BsnI GGCC 2 cut(s) 26, 61
Bsp143I GATC 2 cut(s) 110, 136
BspACI CCGC 2 cut(s) 18, 36
BspANI GGCC 2 cut(s) 26, 61
BspLI GGNNCC 2 cut(s) 25, 62
BssECI CCNNGG 2 cut(s) 21, 147
BssMI GATC 2 cut(s) 110, 136
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 7
BstENI CCTNNNNNAGG 1 cut(s) 55
BstKTI GATC 2 cut(s) 113, 139
BstMBI GATC 2 cut(s) 110, 136
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuRI GGCC 2 cut(s) 26, 61
Cfr13I GGNCC 2 cut(s) 24, 60
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 101
CviJI RGCY 3 cut(s) 26, 35, 61
CviKI_1 RGCY 3 cut(s) 26, 35, 61
CviQI GTAC 1 cut(s) 119
DpnI GATC 2 cut(s) 112, 138
DpnII GATC 2 cut(s) 110, 136
EciI GGCGGA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 102, 141, 161
FatI CATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 2 cut(s) 26, 61
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 11, 76
HpyCH4III ACNGT 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 2 cut(s) 110, 136
LpnPI CCDG 2 cut(s) 34, 135
LweI GCATC 1 cut(s) 33
MalI GATC 2 cut(s) 112, 138
MboI GATC 2 cut(s) 110, 136
MboII GAAGA 1 cut(s) 81
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 4 cut(s) 51, 58, 61, 117
MseI TTAA 1 cut(s) 165
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 22
NdeII GATC 2 cut(s) 110, 136
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 25, 62
NspI RCATGY 1 cut(s) 104
PciI ACATGT 1 cut(s) 100
PkrI GCNGC 1 cut(s) 37
Ple19I CGATCG 1 cut(s) 113
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PscI ACATGT 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 25, 62
PspPI GGNCC 2 cut(s) 24, 60
PvuI CGATCG 1 cut(s) 113
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 110, 136
Sau96I GGNCC 2 cut(s) 24, 60
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 22
SetI ASST 1 cut(s) 153
SfaNI GCATC 1 cut(s) 33
Sse9I AATT 1 cut(s) 65
SsiI CCGC 2 cut(s) 18, 36
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 4 cut(s) 9, 71, 109, 135
TasI AATT 1 cut(s) 65
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 55
XceI RCATGY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.