RchiOBHm_Chr2g0134261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024844
Physical Location & Seq
Forward (+)
51334912 .. 51335334
423 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGCAAACCAGAGTTCTTCCTCTTCTTCATCTTTTCGTACATGTCTCTGCTCTCCCACCTCACATCCAGGCTCATTCAGATGCAGCTTTCACAGAGCCTCAGTTCGGAAATCGAGTCGTACAGTCCCTGCCAACCAGCCCATGAAGATAAAGATGATGACTAACTCGAGCTCCAAAGCTGACCTTCTCAAGGCCTTTCTCATGCAGATCATCAGGCCCTCCAGCCAGAATCTTCAACGACGGAGGAATTTCAGGCCAAGACCCACAAGGTTCTGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.55

Weight (kDa)

12.0

Isoelectric Point (pI)

72.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024844)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134261
rosa_roxburghii Rroxscaffold_2G00110420
rosa_samantha Rh2AG367800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 2 cut(s) 40, 121
AfiI CCNNNNNNNGG 2 cut(s) 105, 190
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 3 cut(s) 87, 171, 179
AluI AGCT 3 cut(s) 87, 171, 179
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 3 cut(s) 192, 215, 254
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 166
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 50
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 190
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 105, 190
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 194, 217, 256
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 105, 190
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 3 cut(s) 194, 217, 256
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 207
BspANI GGCC 3 cut(s) 194, 217, 256
BspCNI CTCAG 1 cut(s) 113
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 96
BsuRI GGCC 3 cut(s) 194, 217, 256
BtsCI GGATG 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 39, 120
CviAII CATG 3 cut(s) 42, 142, 202
CviQI GTAC 2 cut(s) 39, 120
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 3 cut(s) 45, 145, 205
FaiI YATR 4 cut(s) 43, 143, 203, 280
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 41, 141, 201
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 3 cut(s) 194, 217, 256
Hin1II CATG 3 cut(s) 45, 145, 205
HinfI GANTC 2 cut(s) 115, 229
Hpy188I TCNGA 2 cut(s) 80, 108
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 84, 205
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 3 cut(s) 45, 145, 205
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 9 cut(s) 23, 54, 81, 141, 149, 199, 235, 238, 239
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 71
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 5 cut(s) 9, 15, 18, 157, 224
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 5 cut(s) 31, 70, 109, 229, 237
MslI CAYNNNNRTG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 1 cut(s) 207
NlaIII CATG 3 cut(s) 45, 145, 205
NspI RCATGY 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 194
PciI ACATGT 1 cut(s) 41
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PscI ACATGT 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 216
PspXI VCTCGAGB 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 40, 121
RsaNI GTAC 2 cut(s) 39, 120
RseI CAYNNNNRTG 1 cut(s) 79
SacI GAGCTC 1 cut(s) 173
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 173
SetI ASST 6 cut(s) 62, 89, 173, 181, 186, 272
SfaNI GCATC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 2 cut(s) 166, 188
SmoI CTYRAG 2 cut(s) 166, 188
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 194
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 113, 167
TasI AATT 1 cut(s) 247
TfiI GAWTC 1 cut(s) 229
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 18, 158
TspGWI ACGGA 1 cut(s) 256
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 45
XhoI CTCGAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.