Rroxscaffold_2G00110420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0024844
Physical Location & Seq
Reverse (-)
34702957 .. 34706577
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110420.1

Sequence Viewer

Length: 474 bp
ATGGCAAACCAGAGTTCTTCCTCTTCTTCATCTTTTCGTACATGTCTCTGCTCTCCCACCACACATCCAGGCTCATTCAGATGCAGCTTTCACAGAGCCTCAGTTCGGAAATCGAGTCGTACAGTCCGTGCCAACCAGCCCATGAAGATAAAGATGATGACTAACTCGAGCTCCAAAGCTGACCTTCTCAAGGCCTTTCTCATGCAGGTCATCAGGCCCTCCAGCCAGAATCTTCAACGACGGAGGAATTTCAGGCCAAGACCCACAAGAAGCCAACCATTTACTCTCTCATCTCTCCTCACCTGCAAACCAAAAAGGAAGAAACCCAAAGTTTTGATTCTAAGCAACATCACCACGAAGGCAAAGATCTTTTGGTGGTTGTATCGATTTCGGGAAGCTCTCGGTTCTCTCTTTGTGCAACGAAATGCACAGAAGTTAGCATGGAAGTCAATCATTTGTAGTAAGCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.09

Weight (kDa)

11.97

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024844)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134261
rosa_roxburghii Rroxscaffold_2G00110420
rosa_samantha Rh2AG367800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc36I ACCTGC 2 cut(s) 196, 311
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 2 cut(s) 40, 121
AfiI CCNNNNNNNGG 2 cut(s) 105, 190
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 5 cut(s) 87, 171, 179, 398, 466
AluI AGCT 5 cut(s) 87, 171, 179, 398, 466
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 3 cut(s) 192, 215, 254
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 292, 343
AvaI CYCGRG 1 cut(s) 166
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 50
BfuAI ACCTGC 2 cut(s) 196, 311
BglII AGATCT 1 cut(s) 366
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 173, 452
Bsa29I ATCGAT 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 190
BseBI CCWGG 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 385
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 105, 190
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 194, 217, 256
BshVI ATCGAT 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 105, 190
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 3 cut(s) 194, 217, 256
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 3 cut(s) 194, 217, 256
BspCNI CTCAG 1 cut(s) 113
BspDI ATCGAT 1 cut(s) 385
BspMI ACCTGC 2 cut(s) 196, 311
BssMI GATC 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 100, 341
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 385
BsuRI GGCC 3 cut(s) 194, 217, 256
BsuTUI ATCGAT 1 cut(s) 385
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 2 cut(s) 196, 311
Cfr13I GGNCC 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 385
Csp6I GTAC 2 cut(s) 39, 120
CviAII CATG 4 cut(s) 42, 142, 202, 441
CviQI GTAC 2 cut(s) 39, 120
DdeI CTNAG 2 cut(s) 100, 341
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 4 cut(s) 45, 145, 205, 444
FaiI YATR 4 cut(s) 43, 143, 203, 442
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 4 cut(s) 41, 141, 201, 440
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 3 cut(s) 194, 217, 256
Hin1II CATG 4 cut(s) 45, 145, 205, 444
HinfI GANTC 3 cut(s) 115, 229, 337
HphI GGTGA 2 cut(s) 292, 343
Hpy188I TCNGA 2 cut(s) 80, 108
Hpy188III TCNNGA 1 cut(s) 392
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 194, 352
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 5 cut(s) 84, 205, 306, 418, 428
HpyF3I CTNAG 2 cut(s) 100, 341
Hsp92II CATG 4 cut(s) 45, 145, 205, 444
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 71
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 6 cut(s) 9, 15, 18, 157, 224, 331
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 5 cut(s) 31, 109, 229, 237, 308
MslI CAYNNNNRTG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 1 cut(s) 366
NlaIII CATG 4 cut(s) 45, 145, 205, 444
NspI RCATGY 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 311
PceI AGGCCT 1 cut(s) 194
PciI ACATGT 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 2 cut(s) 229, 337
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PscI ACATGT 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 216
PspXI VCTCGAGB 1 cut(s) 166
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 2 cut(s) 40, 121
RsaNI GTAC 2 cut(s) 39, 120
RseI CAYNNNNRTG 1 cut(s) 79
SacI GAGCTC 1 cut(s) 173
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 173
SetI ASST 8 cut(s) 89, 173, 181, 186, 210, 305, 400, 468
SfaNI GCATC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 3 cut(s) 166, 188, 467
SmoI CTYRAG 3 cut(s) 166, 188, 467
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 194
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 3 cut(s) 113, 167, 385
TasI AATT 1 cut(s) 247
TfiI GAWTC 2 cut(s) 229, 337
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 18, 158
TspGWI ACGGA 2 cut(s) 116, 256
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 45
XhoI CTCGAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.