RchiOBHm_Chr2g0135101

Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
52180396 .. 52180803
408 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGGAAGAAGGAGAAGAAGGAACCGAGAAGCAAGTATCAGCAACAACCGGTTTTATTACGAGACAGCTCATAATGTTCATATCGATCTATAATACGCCTTTGCATCTAGCATTGTGTAGACCTCATACAATAACTGTCCTAGCTCTATTGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATTCAATGCATAATCTTTGCATTCAATGTTTATTCCTGAATAATCTCATTTTTCAATTAGGAAAAATGTCACAAACAGTACCCCAACTTAAAGTCATTATACACTTTGATACCTCATCTTCTAAATATATCACTTTGATACATCAACTTATTATTTATGCATAA

Protein Analysis

135

Amino Acids

15.89

Weight (kDa)

8.5

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf1 PF05758 1 - 62 1.6e-34 Ycf1
Ycf1 PF05758 63 - 101 7.8e-18 Ycf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0026739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07565
rosa_chinensis RchiOBHm_Chr2g0135101

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 118
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 3 cut(s) 249, 269, 299
AluBI AGCT 2 cut(s) 67, 143
AluI AGCT 2 cut(s) 67, 143
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 244
AsiGI ACCGGT 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 107, 140
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 112
Bsa29I ATCGAT 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 47
BshVI ATCGAT 1 cut(s) 83
BsiSI CCGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 84, 230
BspDI ATCGAT 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 2 cut(s) 84, 230
Bst4CI ACNGT 2 cut(s) 136, 322
BstKTI GATC 2 cut(s) 87, 233
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 84, 230
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 83
Csp6I GTAC 1 cut(s) 323
CspAI ACCGGT 1 cut(s) 47
CviJI RGCY 2 cut(s) 67, 143
CviKI_1 RGCY 2 cut(s) 67, 143
CviQI GTAC 1 cut(s) 323
DpnI GATC 2 cut(s) 86, 232
DpnII GATC 2 cut(s) 84, 230
EcoT22I ATGCAT 2 cut(s) 255, 406
FblI GTMKAC 1 cut(s) 118
FspBI CTAG 2 cut(s) 107, 140
HapII CCGG 1 cut(s) 48
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 3 cut(s) 172, 199, 280
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 136, 322
HpyCH4V TGCA 4 cut(s) 103, 253, 264, 404
Kzo9I GATC 2 cut(s) 84, 230
LpnPI CCDG 5 cut(s) 61, 157, 184, 253, 293
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 107, 140
MaeIII GTNAC 1 cut(s) 312
MalI GATC 2 cut(s) 86, 232
MboI GATC 2 cut(s) 84, 230
MboII GAAGA 5 cut(s) 17, 26, 160, 187, 354
MflI RGATCY 1 cut(s) 230
MluCI AATT 2 cut(s) 244, 299
MnlI CCTC 2 cut(s) 132, 367
Mph1103I ATGCAT 2 cut(s) 255, 406
MseI TTAA 1 cut(s) 333
MspI CCGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 264
NdeII GATC 2 cut(s) 84, 230
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 312
NsiI ATGCAT 2 cut(s) 255, 406
PctI GAATGC 1 cut(s) 264
PinAI ACCGGT 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 333
Sau3AI GATC 2 cut(s) 84, 230
SetI ASST 4 cut(s) 69, 124, 145, 359
SfaNI GCATC 1 cut(s) 112
Sse9I AATT 2 cut(s) 244, 299
SspMI CTAG 2 cut(s) 107, 140
TaaI ACNGT 2 cut(s) 136, 322
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 244, 299
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 67, 152, 179
XapI RAATTY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 2 cut(s) 107, 140
Zsp2I ATGCAT 2 cut(s) 255, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.