Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029717

Physical Location & Seq

Genomic Coordinates Reverse (-)

60862535 .. 60863080

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAAGGAATCACTCCACTTACTACAGGTAAACTTATCTCTTTGTCCAAGAAAGAGCTGGTTGACTGTGATGTGAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAATGCCTTTGAGTTCATCAATCAAAATCATGGACATAATCCTGAGGCTAATTACCCCTATACCGGTGTTGATGGAACTTGTGGAACAAGCCTAGACCATGGTGTTACTGCTGTTGGCTATGGCATCATTGATGATGGGACTAAGTATTGGTTGGTTAAGAACTCATGGGGGGCCCAGCAACTACATTTTGATCTAAAACTTTATTCAGATTCATTGTTTGGTGATGTAGGGGCATTTGCTGGTCTAAGTTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

123

Amino Acids

13.22

Weight (kDa)

4.36

Isoelectric Point (pI)

0.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 66	1.1e-16	Papain family cysteine protease
Peptidase_C1	PF00112	65 - 97	2.7e-08	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029717)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143161
rosa_samantha	Rh2BG439800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	176
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AoxI	GGCC	1 cut(s)	285
ApaI	GGGCCC	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AsiGI	ACCGGT	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	285, 286
AsuHPI	GGTGA	2 cut(s)	92, 347
AxyI	CCTNAGG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	3 cut(s)	103, 179, 242
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	285, 286
BmiI	GGNNCC	2 cut(s)	286, 287
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	88, 211
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	88, 211
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	288
BshFI	GGCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	287
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	211
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	286, 287
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	88, 211
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	2 cut(s)	88, 211
Bst4CI	ACNGT	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	156, 255, 359
BstDSI	CCRYGG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	285, 286
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	3 cut(s)	143, 212, 279
CviJI	RGCY	6 cut(s)	58, 105, 161, 204, 231, 287
CviKI_1	RGCY	6 cut(s)	58, 105, 161, 204, 231, 287
DdeI	CTNAG	3 cut(s)	156, 255, 359
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	88, 211
Eco24I	GRGCYC	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	88, 211
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	88, 211
FaeI	CATG	3 cut(s)	146, 215, 282
FaiI	YATR	6 cut(s)	144, 150, 174, 213, 234, 280
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	3 cut(s)	142, 211, 278
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	206
GsaI	CCCAGC	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	3 cut(s)	146, 215, 282
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	9, 323
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	92, 347
Hpy166II	GTNNAC	2 cut(s)	32, 64
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	32, 64
HpyCH4III	ACNGT	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	156, 255, 359
Hsp92II	CATG	3 cut(s)	146, 215, 282
Kzo9I	GATC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	12, 44, 168, 190, 302, 339
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	1 cut(s)	163
MnlI	CCTC	2 cut(s)	91, 151
MseI	TTAA	1 cut(s)	270
MspI	CCGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	146, 215, 282
NlaIV	GGNNCC	2 cut(s)	286, 287
PfeI	GAWTC	2 cut(s)	9, 323
PinAI	ACCGGT	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	286, 287
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	285, 286
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	2 cut(s)	285, 286
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	3 cut(s)	31, 60, 94
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	163
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	2 cut(s)	88, 211
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	9, 323
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	118, 315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.