Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0029717

Physical Location & Seq

Genomic Coordinates Reverse (-)

62320215 .. 62322481

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG439800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGAAGGAATCATTCAACTTACTACAGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTGGTTGACTGTGATGTGAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAACGCATTTGAGTTCATCAATCAAAATCATGGACTTGGTACTGAGGCTAATTACCCCTACACTGGTGTTGATGCCTCTTACCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

68

Amino Acids

7.29

Weight (kDa)

4.05

Isoelectric Point (pI)

13.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 62	2.7e-19	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029717)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143161
rosa_samantha	Rh2BG439800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AsuHPI	GGTGA	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	39, 147
BseNI	ACTGG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	40, 148
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	48, 156
BstSFI	CTRYAG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	174, 198
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	3 cut(s)	58, 105, 161
CviKI_1	RGCY	3 cut(s)	58, 105, 161
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	48, 156
Eco130I	CCWWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	144, 205
FatI	CATG	1 cut(s)	142
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	32, 64
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	32, 64
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	48, 156
Hsp92II	CATG	1 cut(s)	146
LpnPI	CCDG	3 cut(s)	12, 44, 162
LweI	GCATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	1 cut(s)	163
MnlI	CCTC	3 cut(s)	91, 151, 199
NlaIII	CATG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SetI	ASST	3 cut(s)	31, 60, 94
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	24
SgeI	CNNG	8 cut(s)	39, 65, 71, 101, 118, 155, 161, 189
Sse9I	AATT	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	9
TscAI	CASTG	2 cut(s)	181, 205
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	181, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.