RchiOBHm_Chr2g0147601

Belongs to the adenylate kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
65143990 .. 65148009
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGCTGTTTTTGAAGGTTATGATTTTCGGTGCACTGGCTTCTGGGAAAGGAACTCAGTGTGAATTGATTGTCAAGAAGTTTGGATTGGTGCACATATCAACAGGGGACCTTGTAAGAGCTGAAGTGTCATCTGGGACTGATATTGGAAACAAAGCCAAAGAGTTCATGAATGCTGGCAAGTTGGTTCCTGATGAAATCGTCACAGCTATGGTGACGTCACGATTATCACGAGAAGATGCAAAAGAAAATGGGTGGATTCTGGATGGATATCCGCGAAGTTTTAGCCAAGCACAAAGTTTGCAGAGTTTGAAGATCATACCAGATGTTTAA

Protein Analysis

109

Amino Acids

11.82

Weight (kDa)

7.86

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 8 - 102 1.1e-36 Adenylate kinase
AAA_17 PF13207 11 - 104 9.5e-22 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 215
AgsI TTSAA 2 cut(s) 13, 310
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 2 cut(s) 119, 206
AluI AGCT 2 cut(s) 119, 206
Alw21I GWGCWC 2 cut(s) 34, 93
Alw44I GTGCAC 2 cut(s) 30, 89
ApaLI GTGCAC 2 cut(s) 30, 89
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 2 cut(s) 34, 93
BauI CACGAG 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 34, 93
BccI CCATC 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 107, 186
BmsI GCATC 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 267
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 39
BseSI GKGCMC 2 cut(s) 34, 93
Bsh1236I CGCG 1 cut(s) 274
BsiHKAI GWGCWC 2 cut(s) 34, 93
BslFI GGGAC 2 cut(s) 119, 148
BsmFI GGGAC 2 cut(s) 119, 148
BsmI GAATGC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 34, 93
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 107, 186
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstSLI GKGCMC 2 cut(s) 34, 93
BstUI CGCG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 32, 62
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 1 cut(s) 166
CviJI RGCY 5 cut(s) 38, 119, 155, 206, 285
CviKI_1 RGCY 5 cut(s) 38, 119, 155, 206, 285
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 106
EcoRV GATATC 1 cut(s) 269
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 20, 95, 167, 209, 317
FaqI GGGAC 2 cut(s) 119, 148
FatI CATG 1 cut(s) 165
FokI GGATG 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 169
HinfI GANTC 1 cut(s) 256
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 32, 91
Hpy188III TCNNGA 6 cut(s) 73, 166, 188, 219, 228, 260
Hpy8I GTNNAC 2 cut(s) 32, 91
HpyAV CCTTC 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 32, 91, 239, 301
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 7 cut(s) 20, 27, 87, 117, 159, 201, 245
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 3 cut(s) 199, 211, 216
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 2 cut(s) 245, 322
MhlI GDGCHC 2 cut(s) 34, 93
MluCI AATT 1 cut(s) 62
MseI TTAA 1 cut(s) 328
MslI CAYNNNNRTG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 175
MvnI CGCG 1 cut(s) 274
NdeII GATC 1 cut(s) 312
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 107, 186
NmuCI GTSAC 3 cut(s) 199, 211, 216
PagI TCATGA 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 107, 186
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 328
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 106
SduI GDGCHC 2 cut(s) 34, 93
SetI ASST 5 cut(s) 18, 111, 121, 208, 218
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 1 cut(s) 62
SsiI CCGC 1 cut(s) 272
TaiI ACGT 1 cut(s) 218
TasI AATT 1 cut(s) 62
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TscAI CASTG 2 cut(s) 39, 62
TseFI GTSAC 3 cut(s) 199, 211, 216
Tsp45I GTSAC 3 cut(s) 199, 211, 216
TspDTI ATGAA 3 cut(s) 154, 182, 207
TspRI CASTG 2 cut(s) 39, 62
VneI GTGCAC 2 cut(s) 30, 89
VpaK11BI GGWCC 1 cut(s) 106
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.