Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001159.1

Orthogroup ID

OG0020512

Physical Location & Seq

Genomic Coordinates Forward (+)

68498 .. 69010

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001159.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgctgtttttgaagattatgatttccggtgcactggcttctggcaaaggaactcagtgtgaattgattgtcaagaagtgtggattggtgcacatatcaacaggggaccttctaagagctgaagtgtcatctgggactgatattggaaacaaagccaaagagttcatgaatgctggcaagttggttcctgatgaaatcgtcacagctatggtgacgtcacgattatcacgagaagatgcaaaagaaaatgggtggattctggatggatatccgcgaagttttagccaagcacaaagtttgcagagtttgaagatcataccagatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0050145 GO:0055035 GO:0055086 GO:0071704 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK DUF1995

Protein Analysis

109

Amino Acids

11.71

Weight (kDa)

7.76

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020512)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147601 RchiOBHm_Chr4g0434501 RchiOBHm_Chr5g0017821
rosa_multiflora	Rmu_co8428293.1_g000001 Rmu_sc0001159.1_g000016
rosa_samantha	Rh2DG479600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	274
AciI	CCGC	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	13, 310
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	2 cut(s)	119, 206
AluI	AGCT	2 cut(s)	119, 206
Alw21I	GWGCWC	2 cut(s)	34, 93
Alw44I	GTGCAC	2 cut(s)	30, 89
ApaLI	GTGCAC	2 cut(s)	30, 89
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	34, 93
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	34, 93
BccI	CCATC	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	107, 186
BmsI	GCATC	2 cut(s)	226, 313
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	267
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	39
BseSI	GKGCMC	2 cut(s)	34, 93
Bsh1236I	CGCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	34, 93
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	119, 148
BsmFI	GGGAC	2 cut(s)	119, 148
BsmI	GAATGC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	34, 93
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	107, 186
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	54, 113
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	274
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstSLI	GKGCMC	2 cut(s)	34, 93
BstUI	CGCG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	32, 62
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	5 cut(s)	38, 119, 155, 206, 285
CviKI_1	RGCY	5 cut(s)	38, 119, 155, 206, 285
DdeI	CTNAG	2 cut(s)	54, 113
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	269
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	20, 95, 167, 209, 317
FaqI	GGGAC	2 cut(s)	119, 148
FatI	CATG	1 cut(s)	165
FokI	GGATG	1 cut(s)	275
HapII	CCGG	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	169
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	32, 91
Hpy188III	TCNNGA	6 cut(s)	73, 166, 188, 219, 228, 260
Hpy8I	GTNNAC	2 cut(s)	32, 91
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	32, 91, 239, 301
HpyF3I	CTNAG	2 cut(s)	54, 113
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	312
LpnPI	CCDG	8 cut(s)	20, 27, 40, 87, 117, 159, 201, 245
LweI	GCATC	2 cut(s)	226, 313
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	199, 211, 216
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	3 cut(s)	25, 245, 322
MhlI	GDGCHC	2 cut(s)	34, 93
MluCI	AATT	1 cut(s)	62
MseI	TTAA	1 cut(s)	328
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	274
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	107, 186
NmuCI	GTSAC	3 cut(s)	199, 211, 216
PagI	TCATGA	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	107, 186
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	328
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	2 cut(s)	34, 93
SetI	ASST	4 cut(s)	111, 121, 208, 218
SfaNI	GCATC	2 cut(s)	226, 313
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	272
TaiI	ACGT	1 cut(s)	218
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TscAI	CASTG	2 cut(s)	39, 62
TseFI	GTSAC	3 cut(s)	199, 211, 216
Tsp45I	GTSAC	3 cut(s)	199, 211, 216
TspDTI	ATGAA	3 cut(s)	154, 182, 207
TspRI	CASTG	2 cut(s)	39, 62
VneI	GTGCAC	2 cut(s)	30, 89
VpaK11BI	GGWCC	1 cut(s)	106
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.