Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029890

Physical Location & Seq

Genomic Coordinates Reverse (-)

67738174 .. 67738437

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTGGGCGTGGGATTTTGTGGTGGATAACTGCGCCATCTGCAGGAACCATATAATGCACCTGTGCATAGAGTGCCAAGCCAACCAGAAAACTGTGACCAACGAAGAATGTATGGTGGCTTGGGAACTTGCAACCATGCCTTCCACTTCCACTGCATTAGTTGATGCCTCAAGACTCGTCAGGTCTGTCCTTTGGATAACAGCGAGTGGGAGTTCCAGAAGTATGGTCATGATTAAAACCATGCATGTCAAAACCAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

87

Amino Acids

9.86

Weight (kDa)

7.67

Isoelectric Point (pI)

66.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	9 - 41	6.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029890)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149921
rosa_rugosa	Rorug02G0415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 72
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	35
CviAII	CATG	4 cut(s)	136, 229, 241, 245
CviJI	RGCY	3 cut(s)	80, 119, 259
CviKI_1	RGCY	3 cut(s)	80, 119, 259
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	246
FaeI	CATG	4 cut(s)	139, 232, 244, 248
FaiI	YATR	9 cut(s)	51, 53, 68, 113, 137, 224, 230, 242, 246
FatI	CATG	4 cut(s)	135, 228, 240, 244
GlaI	GCGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	139, 232, 244, 248
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	171, 216, 229
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	42, 58, 66, 131, 155, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 72
Hsp92II	CATG	4 cut(s)	139, 232, 244, 248
HspAI	GCGC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	28, 74, 98, 166, 229, 241
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	39, 72
NlaIII	CATG	4 cut(s)	139, 232, 244, 248
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	228
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	234
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	2 cut(s)	63, 185
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.