Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0029890

Physical Location & Seq

Genomic Coordinates Reverse (-)

53138115 .. 53139188

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGAGTTCATCACGCGAACTTGACAAGCCTTGTTGGATATTGCAATGATGAAAACAATATGGGGCTCGTCTATGAGTACATGGCCAATGGAAACTTACAAGAACATCTTTCAGGATTGGAGTATCTGCACTATGGTTGTAAGCCACCTATAATTCACAGGGATGTGAAATCAGCAAACATCTTGTTAACTGAGAACTTCCAAGCCAAAGTATCTGATTTTGGCCTATCCAGAAATTTCCCTACAGATGGTGGGACTCATATATCGACAGTTGTTGCTGGAACTCCCGGGTATCTTGACCCTGAGTACTACTTAACAAGCAGGTTAAACGAGAAAAGTGATACTTATAGCTTTGGGATTGTGCTGTTGGAGATTATCACAAGTCGACCTGTTATAACAGGAACGCTTGAGAGGATTCACATTAGCCAATGGGTTGGTTTCATGCTTGCGCAAGGTGACATTAACAGTATTGTTGATCCGAGATTAGAGAGAAATTTCAATGTCAACTCTGTCTGGAAAGTTGTGGAGATAGCAATGGCATGCGTGTCTCCAAACGCCACCAAAAGGCCAATGATGAGTCAGGTACTGATGGAACTGAAGGAGTGCATGGCTACGGAAGAACTGTCTCAGAAAAAGCAGATGGGATATGAAACTGAATTAGGAGAACCAGTTGAGATGGTGTCTCTAAATGATTCTATCAGAATGCTACGTCCCTCAGTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

241

Amino Acids

27.14

Weight (kDa)

5.51

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 196	9.2e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 199	4e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029890)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149921
rosa_rugosa	Rorug02G0415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	385
AccII	CGCG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	235, 493
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	80, 308, 585
AfiI	CCNNNNNNNGG	3 cut(s)	248, 564, 720
AgsI	TTSAA	1 cut(s)	499
AluBI	AGCT	1 cut(s)	351
AluI	AGCT	1 cut(s)	351
Alw26I	GTCTC	3 cut(s)	552, 630, 687
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	84, 223, 566
ApoI	RAATTY	2 cut(s)	235, 493
AspLEI	GCGC	1 cut(s)	451
AsuC2I	CCSGG	2 cut(s)	288, 289
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	69
BccI	CCATC	4 cut(s)	242, 583, 634, 670
BcnI	CCSGG	2 cut(s)	288, 289
BcoDI	GTCTC	3 cut(s)	552, 630, 687
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	288, 289
BmeT110I	CYCGRG	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	288, 289
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	2 cut(s)	288, 289
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 564, 720
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	2 cut(s)	52, 540
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	3 cut(s)	248, 564, 720
BseMI	GCAATG	2 cut(s)	52, 540
BseMII	CTCAG	3 cut(s)	183, 294, 641
BseNI	ACTGG	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	86, 225, 568
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	268, 696
BslI	CCNNNNNNNGG	3 cut(s)	248, 564, 720
BsmAI	GTCTC	3 cut(s)	552, 630, 687
BsmFI	GGGAC	2 cut(s)	268, 696
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	3 cut(s)	86, 225, 568
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	475
BspANI	GGCC	3 cut(s)	86, 225, 568
BspCNI	CTCAG	3 cut(s)	184, 295, 640
BspFNI	CGCG	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	52, 540
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	271, 467, 624
BstC8I	GCNNGC	2 cut(s)	447, 541
BstDEI	CTNAG	4 cut(s)	192, 303, 627, 715
BstENI	CCTNNNNNAGG	1 cut(s)	718
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	3 cut(s)	552, 630, 687
BstMBI	GATC	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	2 cut(s)	286, 287
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	86, 225, 568
BtsCI	GGATG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	447, 541
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	1 cut(s)	451
Cfr9I	CCCGGG	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	79, 307, 584
CviAII	CATG	4 cut(s)	82, 442, 540, 607
CviQI	GTAC	3 cut(s)	79, 307, 584
DdeI	CTNAG	4 cut(s)	192, 303, 627, 715
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	4 cut(s)	85, 445, 543, 610
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 328, 360
FaqI	GGGAC	2 cut(s)	268, 696
FatI	CATG	4 cut(s)	81, 441, 539, 606
FblI	GTMKAC	1 cut(s)	385
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	86, 225, 568
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	85, 445, 543, 610
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	3 cut(s)	189, 386, 505
HindII	GTYRAC	3 cut(s)	189, 386, 505
HinfI	GANTC	4 cut(s)	256, 415, 577, 692
HpaI	GTTAAC	1 cut(s)	189
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	3 cut(s)	189, 386, 505
Hpy188I	TCNGA	4 cut(s)	217, 480, 630, 701
Hpy188III	TCNNGA	4 cut(s)	114, 231, 296, 514
Hpy8I	GTNNAC	3 cut(s)	189, 386, 505
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	3 cut(s)	271, 467, 624
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	3 cut(s)	45, 130, 606
HpyF3I	CTNAG	4 cut(s)	192, 303, 627, 715
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	4 cut(s)	85, 445, 543, 610
HspAI	GCGC	1 cut(s)	449
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	475
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	4 cut(s)	153, 235, 493, 656
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	250, 586
MmeI	TCCRAC	2 cut(s)	16, 348
MnlI	CCTC	2 cut(s)	405, 724
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	4 cut(s)	188, 314, 326, 462
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	288, 289
Mva1269I	GAATGC	1 cut(s)	708
MvnI	CGCG	1 cut(s)	17
NciI	CCSGG	2 cut(s)	288, 289
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	85, 445, 543, 610
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	450
NspI	RCATGY	1 cut(s)	543
PaeI	GCATGC	1 cut(s)	543
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	415, 692
PleI	GAGTC	2 cut(s)	250, 585
PpsI	GAGTC	2 cut(s)	250, 585
PsiI	TTATAA	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	586
RsaI	GTAC	3 cut(s)	80, 308, 585
RsaNI	GTAC	3 cut(s)	79, 307, 584
RseI	CAYNNNNRTG	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	188, 314, 326, 462
Sau3AI	GATC	1 cut(s)	475
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	2 cut(s)	250, 586
ScrFI	CCNGG	2 cut(s)	288, 289
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	151, 326, 353, 391, 457, 585, 712, 725
SfcI	CTRYAG	1 cut(s)	243
SmaI	CCCGGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	4 cut(s)	153, 235, 493, 656
StyD4I	CCNGG	2 cut(s)	286, 287
TaaI	ACNGT	3 cut(s)	271, 467, 624
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	2 cut(s)	266, 385
TasI	AATT	4 cut(s)	153, 235, 493, 656
TatI	WGTACW	2 cut(s)	78, 306
TfiI	GAWTC	2 cut(s)	415, 692
Tru1I	TTAA	4 cut(s)	188, 314, 326, 462
Tru9I	TTAA	4 cut(s)	188, 314, 326, 462
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	3 cut(s)	66, 430, 663
TspGWI	ACGGA	1 cut(s)	629
TspMI	CCCGGG	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	718
XapI	RAATTY	2 cut(s)	235, 493
XceI	RCATGY	1 cut(s)	543
XmaI	CCCGGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.