RchiOBHm_Chr2g0155361

Phosphoenolpyruvate carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029858
Physical Location & Seq
Reverse (-)
72244377 .. 72244900
524 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGTCATTTCAGCAATGCTTTAAAGAAGATTTGTCTTCAAATTCGTTTCTGGTATTGATCTCACACTGGGAAACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGCTCTTGGATGGGGGATGGTCGAGATGGAAATCCCAATGTCACAACAAAGGTACTCATGGGTCTTATTGATATTTTATTCGTAAATCTTCTCCTAATGGTATTATTTACTCTCTTAAATCTAGGAGAGTCCTTTCATGCCAACAAAAGACATGAAGCATGA

Protein Analysis

91

Amino Acids

10.28

Weight (kDa)

6.81

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPcase PF00311 25 - 62 1.2e-08 Phosphoenolpyruvate carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029858)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155361
rosa_samantha Rh4AG143000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 1 cut(s) 168
AgsI TTSAA 2 cut(s) 39, 94
ApoI RAATTY 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 3 cut(s) 118, 125, 134
BfaI CTAG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 71, 79
Bse3DI GCAATG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 144
BseGI GGATG 2 cut(s) 129, 136
BseJI GATNNNNATC 1 cut(s) 144
BseMI GCAATG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 71, 79
Bsp143I GATC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 2 cut(s) 71, 79
BssMI GATC 1 cut(s) 57
BstF5I GGATG 2 cut(s) 129, 136
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 129, 136
BtsIMutI CAGTG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 167
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 4 cut(s) 172, 251, 266, 273
CviJI RGCY 1 cut(s) 117
CviKI_1 RGCY 1 cut(s) 117
CviQI GTAC 1 cut(s) 167
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DraI TTTAAA 1 cut(s) 22
FaeI CATG 4 cut(s) 175, 254, 269, 276
FaiI YATR 4 cut(s) 173, 252, 267, 274
FatI CATG 4 cut(s) 171, 250, 265, 272
FokI GGATG 2 cut(s) 136, 143
FspBI CTAG 1 cut(s) 236
Hin1II CATG 4 cut(s) 175, 254, 269, 276
HinfI GANTC 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 99
Hsp92II CATG 4 cut(s) 175, 254, 269, 276
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 4 cut(s) 35, 52, 60, 94
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 3 cut(s) 27, 38, 194
MluCI AATT 1 cut(s) 40
MlyI GAGTC 1 cut(s) 251
MseI TTAA 2 cut(s) 21, 230
MslI CAYNNNNRTG 1 cut(s) 94
NdeII GATC 1 cut(s) 57
NlaIII CATG 4 cut(s) 175, 254, 269, 276
NmuCI GTSAC 1 cut(s) 154
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 2 cut(s) 21, 230
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 251
SetI ASST 2 cut(s) 113, 168
SgeI CNNG 9 cut(s) 62, 79, 87, 121, 132, 149, 184, 248, 263
SmiMI CAYNNNNRTG 1 cut(s) 94
Sse9I AATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 236
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 40
Tru1I TTAA 2 cut(s) 21, 230
Tru9I TTAA 2 cut(s) 21, 230
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 1 cut(s) 71
XapI RAATTY 1 cut(s) 40
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.