Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0029858

Physical Location & Seq

Genomic Coordinates Forward (+)

36223575 .. 36223931

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCATCTCAGCAATGCTTTAAAGAAGGTTTGTCTTCAAATTCGTTTTTGGTATTGATCTGTTTCTGGTTCTTTATATGTAGCTACTACCTTCTGTCTTTCTATACTTCTTGTCATAATGTTTTCTTAATTTATTTATCAGCACACTGGGAAACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGCTCTTGGATGGGGGGTGGTCGAGATGGAAATTCCAATGTGACAGCAAAGGTACTCGTGGGTCTTATTGATATTTTATTCGTAAATCTTCTCCTAATGGTATTATTTACTCTCTTAAATCTAGGAGAGTTTTTTCATGCCAACAAAAGACCTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

118

Amino Acids

13.4

Weight (kDa)

8.33

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	52 - 86	1.8e-08	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029858)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155361
rosa_samantha	Rh4AG143000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	40, 226
AfaI	GTAC	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	39, 175
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	40, 226
BauI	CACGAG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	2 cut(s)	199, 215
BfaI	CTAG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	152, 160
Bse3DI	GCAATG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	152, 160
Bsp143I	GATC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	152, 160
BssMI	GATC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	2 cut(s)	332, 354
CviJI	RGCY	2 cut(s)	84, 198
CviKI_1	RGCY	2 cut(s)	84, 198
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
DraI	TTTAAA	1 cut(s)	22
FaeI	CATG	2 cut(s)	335, 357
FaiI	YATR	6 cut(s)	77, 79, 105, 117, 333, 355
FatI	CATG	2 cut(s)	331, 353
FokI	GGATG	1 cut(s)	217
FspBI	CTAG	1 cut(s)	317
Hin1II	CATG	2 cut(s)	335, 357
Hpy188III	TCNNGA	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	20, 101
HpyCH4V	TGCA	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	335, 357
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	52, 133, 141, 175
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	2 cut(s)	27, 275
MluCI	AATT	3 cut(s)	40, 129, 226
MseI	TTAA	3 cut(s)	21, 128, 311
MslI	CAYNNNNRTG	1 cut(s)	175
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	335, 357
NmuCI	GTSAC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	21, 128, 311
Sau3AI	GATC	1 cut(s)	57
SetI	ASST	6 cut(s)	31, 86, 93, 194, 249, 349
SmiMI	CAYNNNNRTG	1 cut(s)	175
Sse9I	AATT	3 cut(s)	40, 129, 226
SspMI	CTAG	1 cut(s)	317
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	40, 129, 226
Tru1I	TTAA	3 cut(s)	21, 128, 311
Tru9I	TTAA	3 cut(s)	21, 128, 311
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	152
XapI	RAATTY	2 cut(s)	40, 226
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.