Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024314

Physical Location & Seq

Genomic Coordinates Forward (+)

75831346 .. 75833118

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCTTTGGTTCAAACCATTTCAGTTTCCTTGCAGAAATTGACAATGTGGATTGGAATGTGGAAGTTGGTTACTCATATGTTTGGGTTAGTGACAAATGCAGTGGACCATGTACAATCAGGGACAGATGCTCTACACACTGCAAAGAGCTTGCAAAAGAAGTCAAGAAAATGCATGATCATTTCCATGGTCTTGCTCTTGATCATTGCTCTCATTATTGTCCTCTCTATTCTCAAGCCATGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

83

Amino Acids

9.31

Weight (kDa)

10.31

Isoelectric Point (pI)

20.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	31 - 74	7.1e-11	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024314)

Species	Orthologous Gene IDs
malus_domestica	MD09G1106600.v1.1
prunus_persica	Prupe.3G219000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159811

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
BclI	TGATCA	2 cut(s)	177, 201
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	186, 239
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	186, 239
BseMI	GCAATG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	177, 201
Bsp19I	CCATGG	2 cut(s)	186, 239
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	186, 239
BssMI	GATC	2 cut(s)	177, 201
BssT1I	CCWWGG	2 cut(s)	186, 239
BstAUI	TGTACA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	152
BstDSI	CCRYGG	2 cut(s)	186, 239
BstKTI	GATC	2 cut(s)	180, 204
BstMBI	GATC	2 cut(s)	177, 201
BtgI	CCRYGG	2 cut(s)	186, 239
BtsI	GCAGTG	2 cut(s)	108, 138
BtsIMutI	CAGTG	2 cut(s)	108, 138
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	4 cut(s)	110, 175, 187, 240
CviJI	RGCY	3 cut(s)	5, 150, 238
CviKI_1	RGCY	3 cut(s)	5, 150, 238
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	2 cut(s)	179, 203
DpnII	GATC	2 cut(s)	177, 201
Eco130I	CCWWGG	2 cut(s)	186, 239
Eco47I	GGWCC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	186, 239
EcoT22I	ATGCAT	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	186, 239
FaeI	CATG	4 cut(s)	113, 178, 190, 243
FaiI	YATR	6 cut(s)	78, 80, 111, 176, 188, 241
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	4 cut(s)	109, 174, 186, 239
FauNDI	CATATG	1 cut(s)	78
FbaI	TGATCA	2 cut(s)	177, 201
Hin1II	CATG	4 cut(s)	113, 178, 190, 243
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	165, 199
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4V	TGCA	5 cut(s)	34, 101, 143, 154, 174
Hsp92II	CATG	4 cut(s)	113, 178, 190, 243
Ksp22I	TGATCA	2 cut(s)	177, 201
Kzo9I	GATC	2 cut(s)	177, 201
LpnPI	CCDG	1 cut(s)	105
LweI	GCATC	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	70, 91
MalI	GATC	2 cut(s)	179, 203
MboI	GATC	2 cut(s)	177, 201
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	1 cut(s)	233
Mph1103I	ATGCAT	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	185
NcoI	CCATGG	2 cut(s)	186, 239
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	2 cut(s)	177, 201
NlaIII	CATG	4 cut(s)	113, 178, 190, 243
NmuCI	GTSAC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	177, 201
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	1 cut(s)	152
SfaNI	GCATC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	38
StyI	CCWWGG	2 cut(s)	186, 239
TasI	AATT	1 cut(s)	38
TatI	WGTACW	1 cut(s)	112
TscAI	CASTG	2 cut(s)	108, 145
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	2 cut(s)	108, 145
VpaK11BI	GGWCC	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.