Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022645

Physical Location & Seq

Genomic Coordinates Reverse (-)

77914363 .. 77916305

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATGCTCTCAACTTCGATACCGGTTCTGCAATCCCTTGACCAAGCTGCTCGAAAGGATCTCATTCCAATAAAGTTGGGAGTGAAGGCAGCTAAATTTGCCAAGCAAACAGTTAACACTCAGATGAAATCATTTAAGCGTTATGGAATATTTGCAGATTGGAGTAATCCCTACTTGACTCTTGATCCAAAATATAAAGCTTGTTTCTCTGAGTGGAAAGATCTATTAGGTCCATCATGGGATTTCAGACATGAGTCCATAATCACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 zf-FPG_IleRS

Protein Analysis

90

Amino Acids

10.38

Weight (kDa)

9.67

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022645)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157351 RchiOBHm_Chr2g0162141 RchiOBHm_Chr5g0058951
rosa_samantha	Rh2BG538900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	66, 179
AcsI	RAATTY	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	270
AgeI	ACCGGT	1 cut(s)	22
AluBI	AGCT	3 cut(s)	47, 92, 200
AluI	AGCT	3 cut(s)	47, 92, 200
AlwI	GGATC	2 cut(s)	66, 179
ApeKI	GCWGC	2 cut(s)	47, 89
ApoI	RAATTY	1 cut(s)	95
AsiGI	ACCGGT	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	34, 101
BccI	CCATC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	2 cut(s)	48, 90
BlsI	GCNGC	2 cut(s)	49, 91
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	134, 201
BseXI	GCAGC	2 cut(s)	34, 101
BshTI	ACCGGT	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	58, 184, 220
BspCNI	CTCAG	2 cut(s)	133, 202
BspPI	GGATC	2 cut(s)	66, 179
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	3 cut(s)	58, 184, 220
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	120, 210
BstKTI	GATC	3 cut(s)	61, 187, 223
BstMBI	GATC	3 cut(s)	58, 184, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	34, 101
BstX2I	RGATCY	2 cut(s)	58, 220
BstYI	RGATCY	2 cut(s)	58, 220
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	230
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	237, 251
CviJI	RGCY	3 cut(s)	47, 92, 200
CviKI_1	RGCY	3 cut(s)	47, 92, 200
DdeI	CTNAG	2 cut(s)	120, 210
DpnI	GATC	3 cut(s)	60, 186, 222
DpnII	GATC	3 cut(s)	58, 184, 220
DraIII	CACNNNGTG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	230
FaeI	CATG	2 cut(s)	240, 254
FaiI	YATR	5 cut(s)	144, 195, 238, 252, 260
FatI	CATG	2 cut(s)	236, 250
Fnu4HI	GCNGC	2 cut(s)	48, 90
Fsp4HI	GCNGC	2 cut(s)	48, 90
GluI	GCNGC	2 cut(s)	48, 90
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	240, 254
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	2 cut(s)	178, 254
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	123, 211, 248
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	31, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	120, 210
Hsp92II	CATG	2 cut(s)	240, 254
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	58, 184, 220
LpnPI	CCDG	1 cut(s)	36
Lsp1109I	GCAGC	2 cut(s)	34, 101
MalI	GATC	3 cut(s)	60, 186, 222
MboI	GATC	3 cut(s)	58, 184, 220
MflI	RGATCY	2 cut(s)	58, 220
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	2 cut(s)	172, 263
MseI	TTAA	2 cut(s)	114, 135
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	3 cut(s)	58, 184, 220
NlaIII	CATG	2 cut(s)	240, 254
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	49, 91
PleI	GAGTC	2 cut(s)	172, 262
PpsI	GAGTC	2 cut(s)	172, 262
PshAI	GACNNNNGTC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	58, 220
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	114, 135
SatI	GCNGC	2 cut(s)	48, 90
Sau3AI	GATC	3 cut(s)	58, 184, 220
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	2 cut(s)	172, 263
SetI	ASST	5 cut(s)	49, 94, 202, 232, 272
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	95
SspI	AATATT	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	17, 52
TasI	AATT	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	114, 135
Tru9I	TTAA	2 cut(s)	114, 135
TseI	GCWGC	2 cut(s)	47, 89
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.